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AT1G67960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.842
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Membrane protein,Tapt1/CMV receptor (InterPro:IPR008010); Has 447 Blast hits to 428 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 133; Plants - 49; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT6FeggNOG:KOG2490EMBL:AC012563EMBL:AY064002
EMBL:CP002684EnsemblPlants:AT1G67960EnsemblPlants:AT1G67960.1entrez:843124
GeneID:843124Genevisible:F4HVJ3GO:GO:0005788GO:GO:0009793
GO:GO:0010183GO:GO:0016021GO:GO:0035437Gramene:AT1G67960.1
hmmpanther:PTHR13317hmmpanther:PTHR13317:SF4HOGENOM:HOG000005797InParanoid:F4HVJ3
InterPro:IPR008010KEGG:ath:AT1G67960OMA:RCEVLIDPANTHER:PTHR13317
PaxDb:F4HVJ3Pfam:F4HVJ3Pfam:PF05346PIR:E96702
PRIDE:F4HVJ3PRO:PR:F4HVJ3Proteomes:UP000006548RefSeq:NP_176963.2
STRING:3702.AT1G67960.1TAIR:AT1G67960TMHMM:TMhelixUniGene:At.27107
UniProt:F4HVJ3
Coordinates (TAIR10) chr1:-:25480808..25484176
Molecular Weight (calculated) 70408.60 Da
IEP (calculated) 7.90
GRAVY (calculated) -0.06
Length 624 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIRSSGRKL SFEILSQNSS FENDDTSIRR SSSDPITGNV ASESPRDYGK RKRSKKKKKK VNQVETILEN GDSHSTIITG SSGDFGETTT MFENRLNYYG
101: GGGSGSSGGG CVVTLLDGQT VHHNGFNFGE LRQRNVNGSV DGSNDERWSD TLSSDKKLYM EETSVELSPS ENPPFQEVQH QFPRSEINGN VVRRLDTEAS
201: LDWKQLVADD PDFLSAETRS PMKYFMEEIY GGISLRSTTT PGNDIERERI YDTIFRLPWR CEVLIDTGFF VCVNSFLSLL TVMPIRVLLI FMDAFKNRQF
301: RRPSASELSD LACFLVLATG TILLGRTDIS LIYHMIRGQS TIKLYVVYNI LEIFDRLCQS FCGDVFGALF SSAKGLSISP PEKLRFSTWR FVSDLALTMA
401: ASILHSFILL AQAITLSTCI VAHNNALLAL LVSNNFAEIK SSVFKRFSKD NIHGLVYADS IERFHISAFL VSVLAQNILE SEGAWFGNFI YNATTVFFCE
501: MMIDIIKHSF LAKFNDIKPI AYSEFLQALC EQTLNIRPED RKTNLTFVPL APACVVIRVL TPVYAAHLPY SPLPWRMLWM VILFVITYIM LTSLKVLIGM
601: GLRKHATWYI NRCRRRNSSH LHND
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)