AT1G67960.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.842 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Membrane protein,Tapt1/CMV receptor (InterPro:IPR008010); Has 447 Blast hits to 428 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 133; Plants - 49; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:25480808..25484176 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 70408.60 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.90 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||
Length | 624 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAIRSSGRKL SFEILSQNSS FENDDTSIRR SSSDPITGNV ASESPRDYGK RKRSKKKKKK VNQVETILEN GDSHSTIITG SSGDFGETTT MFENRLNYYG 101: GGGSGSSGGG CVVTLLDGQT VHHNGFNFGE LRQRNVNGSV DGSNDERWSD TLSSDKKLYM EETSVELSPS ENPPFQEVQH QFPRSEINGN VVRRLDTEAS 201: LDWKQLVADD PDFLSAETRS PMKYFMEEIY GGISLRSTTT PGNDIERERI YDTIFRLPWR CEVLIDTGFF VCVNSFLSLL TVMPIRVLLI FMDAFKNRQF 301: RRPSASELSD LACFLVLATG TILLGRTDIS LIYHMIRGQS TIKLYVVYNI LEIFDRLCQS FCGDVFGALF SSAKGLSISP PEKLRFSTWR FVSDLALTMA 401: ASILHSFILL AQAITLSTCI VAHNNALLAL LVSNNFAEIK SSVFKRFSKD NIHGLVYADS IERFHISAFL VSVLAQNILE SEGAWFGNFI YNATTVFFCE 501: MMIDIIKHSF LAKFNDIKPI AYSEFLQALC EQTLNIRPED RKTNLTFVPL APACVVIRVL TPVYAAHLPY SPLPWRMLWM VILFVITYIM LTSLKVLIGM 601: GLRKHATWYI NRCRRRNSSH LHND |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)