suba logo
AT2G16405.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.972
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 17028 Blast hits to 11710 proteins in 500 species: Archae - 20; Bacteria - 2780; Metazoa - 6091; Fungi - 3873; Plants - 2093; Viruses - 0; Other Eukaryotes - 2171 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IQ13eggNOG:ENOG410Y3SDEMBL:BT026375EMBL:CP002685
EnsemblPlants:AT2G16405EnsemblPlants:AT2G16405.1entrez:816138Gene3D:2.130.10.10
GeneID:816138Gramene:AT2G16405.1hmmpanther:PTHR22838hmmpanther:PTHR22838:SF4
HOGENOM:HOG000005847InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
InterPro:IPR019775KEGG:ath:AT2G16405OMA:IGVAWNHPfam:PF00400
Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q0V845PROSITE:PS00678
PROSITE:PS50082PROSITE:PS50294Proteomes:UP000006548RefSeq:NP_671857.2
scanprosite:PS00678SMART:SM00320SMR:Q0V845STRING:3702.AT2G16405.1
SUPFAM:SSF50978TAIR:AT2G16405UniGene:At.46003UniProt:Q0V845
Coordinates (TAIR10) chr2:-:7105915..7108787
Molecular Weight (calculated) 53968.90 Da
IEP (calculated) 8.98
GRAVY (calculated) -0.37
Length 482 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEKNGSSEV EIGEKDETKK QSKDLEFLSC MMQPKTADSD PHYIGIRRIL LHRKADSGVI SRRYDWRCNG KGYVAYRNFI SKPRKWENLR TPSLLSSPGN
101: SGRWLPSPSP LSHQFEAESF TSSRDLRSVN QVSSRRASFS SSLSDGDNSY RRGGVEHAYS FVGMHCIFDQ CKSSVTVLKF GHMSSDILAY GASDGSLTVC
201: SLLEEPSVLK QLTGHSKDVT DFDFSSNNQY IASSSLDKTI RVWELSRGVC IRVIYGISPQ YCIRFHPVNN NFLSAGNANK ELTVFNFSTG RIIKKLLFED
301: EVTSMDHDHT GQIIFCGDGQ GTVYSVSMDS HTGSLSRSHR HRTNHKSPVT TVKYRSFSLL ASGPVLLTCT QDGNLSFFSV ALQIKGYLTL RCSLKLAPRI
401: HRIQASFCPL LSLEKGEYIV AGSEDSNVYF YDLTKPKHTC VNKLQGHRFP VMCVAWNHGE NLLASSDFYG VVIVWKRAKT SS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)