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AT1G57980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.723
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nucleotide-sugar transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotide-sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: purine permease 17 (TAIR:AT1G57943.1); Has 334 Blast hits to 326 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 328; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:27390EMBL:AC079604EMBL:AC079991EMBL:AK118723
EMBL:BT005404EMBL:CP002684EnsemblPlants:AT1G57980EnsemblPlants:AT1G57980.1
entrez:842165GeneID:842165Genevisible:Q9C654GO:GO:0005215
GO:GO:0016021Gramene:AT1G57980.1hmmpanther:PTHR31376hmmpanther:PTHR31376:SF2
HOGENOM:HOG000115800InterPro:IPR030182KEGG:ath:AT1G57980PANTHER:PTHR31376
PaxDb:Q9C654Pfam:PF16913Pfam:Q9C654PhylomeDB:Q9C654
PRIDE:Q9C654PRO:PR:Q9C654ProteinModelPortal:Q9C654Proteomes:UP000006548
RefSeq:NP_176099.1TAIR:AT1G57980TMHMM:TMhelixUniGene:At.36942
UniProt:Q9C654
Coordinates (TAIR10) chr1:-:21439444..21440732
Molecular Weight (calculated) 44831.10 Da
IEP (calculated) 8.19
GRAVY (calculated) 0.42
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: MEMTEASKHT TTHEESEHVQ NPEPDQVLSQ RQLLQLNQKK WWISVLICLF LVLLGDSLVI LLLNFFYVQD RREDNNQDLQ YKGTWMQALI QNAAFPILIP
101: LFFIFPSPKP NPETINTRFL SIRLILLYFS LGVLVAAHSK LYALGKLYSS YGFFMLISGS QLIFTLIFTA IINRFKFTRW IIISIVLILV SYAFGGPVFS
201: GEPDENEHFY GIQAWLTFAA SVAFALSLCL VQLSFEKLLV KTKRYGNKKV FRMVLEMQIC VSSVASVVCL VGLFASGEYK ELKGDSERFK KGETYYVLSL
301: VGLALSWQVW AVGLIGLVLY VSSVFSNIVH MCASPLMAFI VVLAFDFIDD DFSWPRIGAL IGSVLALGSY FYTLHKRNKK KMVEFNQSEN NVEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)