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AT5G27360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.869
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Encodes a sugar-porter family protein that unlike the closely related gene, SFP1, is not induced during leaf senescence.
Computational
Description (TAIR10)
SFP2; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G27350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNQKeggNOG:KOG0254EMBL:AC007123EMBL:AY026255
EMBL:CP002688EnsemblPlants:AT5G27360EnsemblPlants:AT5G27360.1entrez:832795
GeneID:832795Genevisible:Q94CI6GO:GO:0005351GO:GO:0005355
GO:GO:0005887GO:GO:0015992GO:GO:0035428GO:GO:0046323
GO:GO:1904659Gramene:AT5G27360.1hmmpanther:PTHR23500hmmpanther:PTHR23500:SF62
HOGENOM:HOG000202868InParanoid:Q94CI6InterPro:IPR003663InterPro:IPR005828
InterPro:IPR005829InterPro:IPR020846KEGG:ath:AT5G27360ncoils:Coil
OMA:SGMCITSPaxDb:Q94CI6Pfam:PF00083Pfam:Q94CI6
Pfscan:PS50850PhylomeDB:Q94CI6PRIDE:Q94CI6PRINTS:PR00171
PRO:PR:Q94CI6PROSITE:PS00216PROSITE:PS50850ProteinModelPortal:Q94CI6
Proteomes:UP000006548Reactome:R-ATH-428790RefSeq:NP_568494.1scanprosite:PS00216
SMR:Q94CI6STRING:3702.AT5G27360.1SUPFAM:SSF103473TAIR:AT5G27360
tair10-symbols:SFP2TIGRfam:TIGR00879TIGRFAMs:TIGR00879TMHMM:TMhelix
UniGene:At.26154UniProt:Q94CI6
Coordinates (TAIR10) chr5:+:9657119..9662425
Molecular Weight (calculated) 52464.10 Da
IEP (calculated) 8.53
GRAVY (calculated) 0.58
Length 478 amino acids
Sequence (TAIR10)
(BLAST)
001: MHKMMVVEKE RSIEERLLQL KNQNDDSECR ITACVILSTF IAVCGSFSFG VSLGYTSGAE IGIMKDLDLS IAQFSAFASL STLGAAIGAL FSGKMAIILG
101: RRKTMWVSDL LCIIGWFSIA FAKDVMWLNF GRISSGIGLG LISYVVPVYI AEISPKHVRG TFTFTNQLLQ NSGLAMVYFS GNFLNWRILA LLGALPCFIQ
201: VIGLFFVPES PRWLAKVGSD KELENSLLRL RGGNADISRE ASDIEVMTKM VENDSKSSFC DLFQRKYRYT LVVGIGLMLI QQFSGSSAVL SYASTILRKA
301: GFSVTIGSTL LGLFMIPKAM IGVILVDKWG RRPLLLTSVS GMCITSMLIG VAFTLQKMQL LPELTPVFTF ICVTLYIGTY AIGLGGLPWV IMSEIFPMNI
401: KVTAGSIVTL VSWSSSSIVT YAFNFLLEWS TQGTFYVFGA VGGLALLFIW LLVPETKGLS LEEIQASLIR EPDRINQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)