AT5G27360.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:vacuole 0.869 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a sugar-porter family protein that unlike the closely related gene, SFP1, is not induced during leaf senescence. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
SFP2; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G27350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:9657119..9662425 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 52464.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.53 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.58 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 478 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MHKMMVVEKE RSIEERLLQL KNQNDDSECR ITACVILSTF IAVCGSFSFG VSLGYTSGAE IGIMKDLDLS IAQFSAFASL STLGAAIGAL FSGKMAIILG 101: RRKTMWVSDL LCIIGWFSIA FAKDVMWLNF GRISSGIGLG LISYVVPVYI AEISPKHVRG TFTFTNQLLQ NSGLAMVYFS GNFLNWRILA LLGALPCFIQ 201: VIGLFFVPES PRWLAKVGSD KELENSLLRL RGGNADISRE ASDIEVMTKM VENDSKSSFC DLFQRKYRYT LVVGIGLMLI QQFSGSSAVL SYASTILRKA 301: GFSVTIGSTL LGLFMIPKAM IGVILVDKWG RRPLLLTSVS GMCITSMLIG VAFTLQKMQL LPELTPVFTF ICVTLYIGTY AIGLGGLPWV IMSEIFPMNI 401: KVTAGSIVTL VSWSSSSIVT YAFNFLLEWS TQGTFYVFGA VGGLALLFIW LLVPETKGLS LEEIQASLIR EPDRINQS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)