AT1G54020.2
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G54010.1); Has 3048 Blast hits to 3018 proteins in 88 species: Archae - 0; Bacteria - 75; Metazoa - 0; Fungi - 2; Plants - 2967; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:20161805..20163706 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 41803.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.05 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 372 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MECSSVSVLG ILLVFPLLHN LVTISGQNLP AVGLFTFGDS NFDAGNKKFL TSAPLPQNFW PYGKSRDDPK GKFSDGKIVP DFIAKFMGIP HDLPPALKPG 101: TDVSRGASFA VGSASILGSP KDSLALNQQV RKFNQMISNW KVDYIQKSVF MISIGMEDYY NFTKNNPNAE VSAQQAFVTS VTNRFKSDIN LLYSSGASKF 201: VVHLLAPLGC LPIARQEFKT GNNCYEKLND LAKQHNAKIG PILNEMAETK PDFQFTVFDF YNVILRRTQR NMNYRFSVTN ISCCGVGTHY AYGCGLPNVH 301: SKLCEYQRSY LYFDARHNTE KAQEAFAHLI FGADPNVIQP MNVRELMVYP VNEPMREFWE DPMDEKLSLV QY |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)