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AT1G54020.2
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G54010.1); Has 3048 Blast hits to 3018 proteins in 88 species: Archae - 0; Bacteria - 75; Metazoa - 0; Fungi - 2; Plants - 2967; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2628-MONOMERBioGrid:27065EC:3.1.1.-eggNOG:ENOG410JU51
eggNOG:ENOG411077BEMBL:AC006577EMBL:AF348585EMBL:AY054258
EMBL:AY132004EMBL:CP002684EnsemblPlants:AT1G54020EnsemblPlants:AT1G54020.2
entrez:841840Gene3D:3.40.50.1110GeneID:841840Genevisible:Q9C5N8
GO:GO:0005576GO:GO:0005773GO:GO:0016042GO:GO:0016788
hmmpanther:PTHR22835hmmpanther:PTHR22835:SF266HOGENOM:HOG000237649InParanoid:Q9C5N8
InterPro:IPR001087InterPro:IPR013830KEGG:ath:AT1G54020OMA:RSYLYFD
PaxDb:Q9C5N8Pfam:PF00657Pfam:Q9C5N8PhylomeDB:Q9C5N8
PIR:G96580PRIDE:Q9C5N8PRO:PR:Q9C5N8ProteinModelPortal:Q9C5N8
Proteomes:UP000006548RefSeq:NP_001077719.1RefSeq:NP_175804.1RefSeq:NP_849805.1
STRING:3702.AT1G54020.2TAIR:AT1G54020TMHMM:TMhelixUniGene:At.20006
UniProt:Q9C5N8
Coordinates (TAIR10) chr1:-:20161805..20163706
Molecular Weight (calculated) 41803.10 Da
IEP (calculated) 8.05
GRAVY (calculated) -0.22
Length 372 amino acids
Sequence (TAIR10)
(BLAST)
001: MECSSVSVLG ILLVFPLLHN LVTISGQNLP AVGLFTFGDS NFDAGNKKFL TSAPLPQNFW PYGKSRDDPK GKFSDGKIVP DFIAKFMGIP HDLPPALKPG
101: TDVSRGASFA VGSASILGSP KDSLALNQQV RKFNQMISNW KVDYIQKSVF MISIGMEDYY NFTKNNPNAE VSAQQAFVTS VTNRFKSDIN LLYSSGASKF
201: VVHLLAPLGC LPIARQEFKT GNNCYEKLND LAKQHNAKIG PILNEMAETK PDFQFTVFDF YNVILRRTQR NMNYRFSVTN ISCCGVGTHY AYGCGLPNVH
301: SKLCEYQRSY LYFDARHNTE KAQEAFAHLI FGADPNVIQP MNVRELMVYP VNEPMREFWE DPMDEKLSLV QY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)