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AT1G50950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.965
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thioredoxin protein with domain of unknown function (DUF1692)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin domain (InterPro:IPR013766), Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: PDI-like 5-3 (TAIR:AT3G20560.1); Has 4852 Blast hits to 3459 proteins in 323 species: Archae - 0; Bacteria - 20; Metazoa - 2384; Fungi - 872; Plants - 851; Viruses - 3; Other Eukaryotes - 722 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP7XeggNOG:KOG2667EMBL:CP002684EnsemblPlants:AT1G50950
EnsemblPlants:AT1G50950.1entrez:841517Gene3D:3.40.30.10GeneID:841517
GO:GO:0005623GO:GO:0016021GO:GO:0045454Gramene:AT1G50950.1
hmmpanther:PTHR10984hmmpanther:PTHR10984:SF37InParanoid:F4I7X9InterPro:IPR012336
InterPro:IPR012936InterPro:IPR013766KEGG:ath:AT1G50950OMA:CTEEPTL
PaxDb:F4I7X9Pfam:PF00085Pfam:PF07970Pfam:PF13850
Pfscan:PS51352PRIDE:F4I7X9PROSITE:PS51352ProteinModelPortal:F4I7X9
Proteomes:UP000006548RefSeq:NP_175508.2SMR:F4I7X9STRING:3702.AT1G50950.1
SUPFAM:SSF52833TAIR:AT1G50950TMHMM:TMhelixUniGene:At.37919
UniProt:F4I7X9
Coordinates (TAIR10) chr1:+:18880465..18884043
Molecular Weight (calculated) 54366.50 Da
IEP (calculated) 6.85
GRAVY (calculated) -0.28
Length 484 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSTSKIKSV DFYRKIPRDL TEASLSGAGL SIVAALAMLF LFGMELSSYL AINTSTSVIV DKSSDGDFLN IDFNISFPAL SCEFASVDVS DVFGTHRLNI
101: SKTIRKVPID PHLRATAEEF HSTSDLHLIN HGDEDHGDNS TYADIPLTGA AFEKFTHHFQ ILVVNFYAPW CYWSNRLKPS WVKASQITRE RYNPGTDDRV
201: LLGSVDCTEE PTLCKSNHIQ GYPSIRIFRR GSGLREDHGN HEHESYYGDR DTDSLVKMVE ELLKPIKKED HKLALDGKSD NAASTFKKAP VSGGCRIEGY
301: VRAKKVPGEL VISAHSGAHS FDASQMNMSH IVTHLTFGTM VSERLWTDMK RLLPYLGQSY DRLNGKSFIN ERQLDANVTI EHYLQIIKTE VISRRSGQEH
401: SLIEEYEYTA HSSVARSYHY PEAKFHFELS PMQVLISENP KSFSHFITNV CAIIGGVFTV AGILDSIFQN TVRMVKKIEL GKNI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)