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AT1G50110.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein; FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (TAIR:AT1G50090.1); Has 12195 Blast hits to 12195 proteins in 2532 species: Archae - 155; Bacteria - 7654; Metazoa - 266; Fungi - 412; Plants - 250; Viruses - 0; Other Eukaryotes - 3458 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G50110-MONOMEREC:2.6.1.42eggNOG:COG0115eggNOG:KOG0975
EMBL:AC015445EMBL:AJ312747EMBL:AY088621EMBL:CP002684
EMBL:Z26805EnsemblPlants:AT1G50110EnsemblPlants:AT1G50110.1entrez:841433
GeneID:841433Genevisible:Q9LPM9GO:GO:0005829GO:GO:0009097
GO:GO:0009098GO:GO:0009099GO:GO:0010326GO:GO:0033506
GO:GO:0052654GO:GO:0052655GO:GO:0052656GO:GO:0071267
Gramene:AT1G50110.1gramene_pathway:2.6.1.-gramene_pathway:PWY-1186hmmpanther:PTHR11825
hmmpanther:PTHR11825:SF53HOGENOM:HOG000276704InParanoid:Q9LPM9InterPro:IPR001544
InterPro:IPR005786InterPro:IPR018300KEGG:00270+2.6.1.42KEGG:00280+2.6.1.42
KEGG:00290+2.6.1.42KEGG:00770+2.6.1.42KEGG:00966+2.6.1.42KEGG:ath:AT1G50110
KO:K00826OMA:YQVEERDPANTHER:PTHR11825PaxDb:Q9LPM9
Pfam:PF01063Pfam:Q9LPM9PhylomeDB:Q9LPM9PIR:D96537
PIRSF:PIRSF006468PRIDE:Q9LPM9PRO:PR:Q9LPM9PROSITE:PS00770
ProteinModelPortal:Q9LPM9Proteomes:UP000006548Reactome:R-ATH-70895RefSeq:NP_175431.1
scanprosite:PS00770SMR:Q9LPM9STRING:3702.AT1G50110.1SUPFAM:SSF56752
TAIR:AT1G50110TIGRfam:TIGR01123TIGRFAMs:TIGR01123UniGene:At.10368
UniGene:At.67645UniPathway:UPA00047UniPathway:UPA00048UniPathway:UPA00049
UniProt:Q9LPM9
Coordinates (TAIR10) chr1:-:18558203..18560219
Molecular Weight (calculated) 38863.60 Da
IEP (calculated) 6.62
GRAVY (calculated) -0.19
Length 356 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPSSSPLRT TSETDEKYAN VKWEELGFAL TPIDYMYVAK CRQGESFTQG KIVPYGDISI SPCSPILNYG QGLFEGLKAY RTEDDRIRIF RPDQNALRMQ
101: TGAERLCMTP PTLEQFVEAV KQTVLANKKW VPPPGKGTLY IRPLLLGSGA TLGVAPAPEY TFLIYASPVG DYHKVSSGLN LKVDHKYHRA HSGGTGGVKS
201: CTNYSPVVKS LLEAKSAGFS DVLFLDAATG RNIEELTACN IFIVKGNIVS TPPTSGTILP GVTRKSISEL AHDIGYQVEE RDVSVDELLE AEEVFCTGTA
301: VVVKAVETVT FHDKKVKYRT GEAALSTKLH SMLTNIQMGV VEDKKGWMVD IDPCQG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)