AT1G47340.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : F-box and associated interaction domains-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT1G47350.1); Has 1903 Blast hits to 1829 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1899; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:17354123..17356494 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 53456.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.79 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 459 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MLKKTAPNSP KRRRCSSFAA VDLVGSANRT FMVSVSLPKE LILEILKRLP AKSVKRFHCV SKQWASMLSC PHFRELFLTR SSSAQPRLLF AIEKHNQWSL 101: FSLPQRLTPY EKSSSSSVVV TPEFHMKFPP DGMLIYPRHD RRFSFGYASG LMYFYGMWIN EHDYDGVPVI CNPLTGRYAS LPFLERYRKA FSFFGFDPIE 201: KQYKVLFMAY PSGPDHHTVL TFGTGEMSWR KIECSVKHDI VSDGICINGV MYYLGDTSEF MTAFVVVCFD VRSETFSFIY PGSYCEVINY KGKLGLVFCD 301: DYTDDAIELR LWVLEDKEKI EWSKYAYKLK DEKFSAHYVS IVGVSAAGEI VLSMADFTSK QPFYVFYYNP ERNTLQCTEI QGFEEHHGTF DRRSRVRVFV 401: DDCSSFYRFA DHVEYLNVDE PKLLKSKIYD GPNAKIEWEE EEEEDEDEDQ EKEEEDQWS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)