AT1G32090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : early-responsive to dehydration stress protein (ERD4) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
early-responsive to dehydration stress protein (ERD4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT3G21620.1); Has 1524 Blast hits to 1296 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 187; Fungi - 776; Plants - 431; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:11540244..11544041 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93138.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.36 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||||||||||
| Length | 806 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATLQDIGVS ALINLFGAFL FLIAFAVLRI QPINDRVYFP KWYLTGERNS PRRSDRTLVG KFVNLNYKTY FTFLNWMPQA MKMSESEIIR HAGLDSAIFL 101: RIYTLGLKIF APVMVLALVV LVPVNVSSGT LFFLKKELVV SNIDKLSISN VQPKSSKFFF HIAVEYIFTF WACFMLYREY NNVAIMRLQY LASQRRRPEQ 201: FTVVVRNVPD MPGHSVPDTV DQFFKTNHPE HYLCHQAVYN ANTYAKLVKQ RAKLQRWFDY YVLKHQRNPH KQPTCRTGFL GLWGKRVDSI EYYKQQIKEF 301: DHNMSLERQK VLKDSKLMLP VAFVSFDSRW GAAVCAQTQQ SKNPTLWLTS SAPEPRDIYW QNLAIPFISL TIRKLVIGVS VFALVFFYMI PIAFVQSLAN 401: LEGLDRVAPF LRPVTRLDFI KSFLQGFLPG LALKIFLWIL PTVLLIMSKI EGYIALSTLE RRAAAKYYYF MLVNVFLGSI IAGTAFEQLH SFLHQSPSQI 501: PRTIGVSIPM KATFFITYIM VDGWAGIAGE ILRLKPLVIF HLKNMFIVKT EEDRVRAMDP GFVDFKETIP SLQLYFLLGI VYTAVTPILL PFILIFFAFA 601: YLVYRHQIIN VYNQQYESCG AFWPHVHGRI IASLLISQLL LMGLLASKKA ADSTPLLIIL PILTLSFHKY CKHRFEPAFR QYPLEEAMAK DKLEKETEPE 701: LNMKADLADA YLHPIFHSFE KEVELSSSSS SEKETHQEET PEVRVDKHET QSSSPVTELG TSSHHHHVYN STSPSSHYAS AYEQSSSQYE YHYNTHQYEE 801: HEYRYN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)