AT3G27390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40640.1); Has 101 Blast hits to 99 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10133372..10136111 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65500.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.26 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.24 | ||||||||||||||||||||||||||||||||
| Length | 588 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEPPIGFRAS LFQFLLFLPY FIGLLFLGFI KGIVLCPLVC LVVTIGNSAV ILSLLPVHIV WTFYSIVSAK QVGPILKIFL CLCLPAAIIL WPIVGILGSV 101: LGGALYGFFS PIFATFDAVG EGKPYQFFHC FYDGTWSTMQ RSFTVVRDFK DVCFHSYFSL MDELKQSCPD RKYYEIRLLQ LPGALVVSVL GILVDPPVIS 201: LVAICKSPYM LFKGWHRLFH DLIGREGPFL ETMCVPIAGL AILLWPLAVT GAVIGSVISS IFLGAYAGVV SYQESSFYYG LCYIVASVSI YDEYSTDILD 301: LPEGSCFPRP KYRRKDEEPT PFSGPVPRLG SVKNASSMRG GSVRVPMIDI KPLDLLNELF VECRRYGEVL ATKGLINSKD IEEARSSKGS QVISVGLPAY 401: GLLYEILRSV KANSSGLLLS DGVTEITTMN RPKDVFFDWF LNPFLILKEQ MKATNLSEEE EEYLGRLVLL FGDPERLKSS NAISASPPLT ERKRAELDAF 501: ARRMQGLTKT VSRYPTFRRH FVALVKKLSE DLDLKDNNSA KDESITEPPA PVKIISRIFS QRSFRRKGSV NGSDQESQKG VSRNVDIV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)