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AT1G30320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.935
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Remorin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Remorin family protein; FUNCTIONS IN: DNA binding; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT2G02170.2); Has 12397 Blast hits to 7447 proteins in 1066 species: Archae - 25; Bacteria - 2897; Metazoa - 2750; Fungi - 978; Plants - 862; Viruses - 38; Other Eukaryotes - 4847 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKXVeggNOG:ENOG410YBPIEMBL:AC025295EMBL:AK118811
EMBL:BT006124EMBL:CP002684EnsemblPlants:AT1G30320EnsemblPlants:AT1G30320.1
entrez:839912GeneID:839912GO:GO:0005886Gramene:AT1G30320.1
hmmpanther:PTHR31471hmmpanther:PTHR31471:SF17HOGENOM:HOG000238733InterPro:IPR005516
KEGG:ath:AT1G30320ncoils:CoilOMA:SSYKICCPfam:PF03763
PhylomeDB:Q9C8G3PIR:E86427Proteomes:UP000006548RefSeq:NP_174322.1
STRING:3702.AT1G30320.1TAIR:AT1G30320UniGene:At.40574UniProt:Q9C8G3
Coordinates (TAIR10) chr1:+:10680348..10682852
Molecular Weight (calculated) 57401.00 Da
IEP (calculated) 7.91
GRAVY (calculated) -1.07
Length 509 amino acids
Sequence (TAIR10)
(BLAST)
001: MDYERIQKVQ KSIISPTKLR MKLMGPLNNM KREGSKSNSN SSRTSPSRLQ IPDDSEFSKN SLLASNSYSD DDVAATTTDI EVAKLPNEPV LYPTENDNQG
101: SKDRCEGVVP RENDQPRLQQ FRKGDLNMAS PHIMRPQEDE NLDYDSNASS SSFEFHRARG ERSNQNHGSR GYPSRQMPSK WNDAEKWIMS RQNMVMRKNG
201: QGNRIPVRIV PDNAGYEHNK SRMDLCQSSQ VDGFEKFPNV VPSAPHPILT QEYGGDSLID QSTQSNDLAD SSHDHTTGGP AIRSVCMRDM GTEMTPIPSQ
301: EPSRSVTPVG ATTPLRSPTS SLPSTPRGGQ PEESSMSKNT RRELSEEEEK AKTRREIVAL GVQLGKMNIA AWASKEEEEN KKNNGDAEEA QKIEFEKRAT
401: AWEEAEKSKH NARYKREEIR IQAWESQEKA KLEAEMRRIE AKVEQMKAEA EAKIMKKIAL AKQRSEEKRA LAEARKTRDA EKAVAEAQYI RETGRIPASS
501: YKICCGWFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)