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AT5G59790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Domain of unknown function (DUF966)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT3G46110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKUVeggNOG:ENOG410YDQZEMBL:AB015475EMBL:AK226458
EMBL:AY093139EMBL:BT008516EMBL:CP002688EnsemblPlants:AT5G59790
EnsemblPlants:AT5G59790.1entrez:836100GeneID:836100Gramene:AT5G59790.1
hmmpanther:PTHR31083hmmpanther:PTHR31083:SF4HOGENOM:HOG000238453IntAct:Q9FJF5
InterPro:IPR010369InterPro:IPR021182KEGG:ath:AT5G59790OMA:YENQSTE
Pfam:PF06136PhylomeDB:Q9FJF5PIRSF:PIRSF031043Proteomes:UP000006548
RefSeq:NP_200787.1STRING:3702.AT5G59790.1TAIR:AT5G59790UniGene:At.29206
UniProt:Q9FJF5
Coordinates (TAIR10) chr5:+:24090950..24092804
Molecular Weight (calculated) 47786.90 Da
IEP (calculated) 8.62
GRAVY (calculated) -0.87
Length 423 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSRVFRATP DNNYLVPRRS KDQQDTSPDR NRIWSEPRLK PVVNRKVPVV YYLCRNGQLD HPHFIEVTLS SHDGLYLKDV INRLNDLRGK GMASLYSWSS
101: KRSYKNGFVW HDLSEDDFIF PVQGQEYVLK GSEVLDSCLI SNPRSLLETS SFRDPRSLNP DKNSGDDIPA VINRRRNQSW SSIDLSEYKV YKATESSAES
201: TQRLAADAST QTDDRRRRRR PAKEEIEEVK SPASYENQST ELSRDEISPP PSDSSPETLE NLIKADGRLI LRPSESSTDH RTVESLSSGR MRASAVLMQL
301: ISCGTMSFKE CGPVLLKDQG LALNGRSGCT ITRGAEDNGE ERVDKELKSF GRVQLEDKEY FSGSLIETKK ELVPALKRSS SYNADRCSRM GPTTEKDEEE
401: AVRAKCIPRK PKPVAKRNNG GQQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)