AT1G29560.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT1G29570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:10332647..10335510 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68855.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.99 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.54 | ||||||||||||||||||||||||||||||||
| Length | 572 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADAGDNQRR SDEKESISTE ETKENEDLGS GRNDTGHHVY NEGHEEVLEY LKQERLKDAD MQRKRHETES KSIEGTTPDI RLSDSGKGSD EIQKADSVYK 101: RSNADTRVSL PQQRRLKDVV EAHRVRRETE SRLWHQERDR SLVWGGSEPR MRFDESTQGW RDSDYESKWR FHERTPDWDW RDSESRMRSH ERTQDRRGSE 201: SQGVFDERTE RRQEPVRWPG EECWCLRCRN GGSCRYNHPT QLPQELPVRN RLQICRYFLR GYCKFGSVCG FQHIRDRDVA EPMYENWSFD VRTQRRYEIE 301: YSGFRPEKRA KTSLDSVEPD SRKRLEGLEN KREQENPQEP ERQRTEAQDN LQEFREQENP QNQIQINTER QRTMAHDNLQ IVSDSRMHDP RRHDTELRLE 401: REKMVNRELE KQRIEHLIDP LVRRYMQAKR DKEVEQRERA SIESQRIVAQ EILRQQRLQG MRENQNVDSR MHDPRRHDTE LRLEREKMVN RELEKQRIEP 501: LIGPLVRRYM QAKRDKEVEQ RERASIESQR IVAQENLRQQ RLQGMRENQN VDAHDQEKTQ ELGFKGKEGD GV |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)