AT5G38050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA polymerase II transcription elongation factor | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA polymerase II transcription elongation factor; CONTAINS InterPro DOMAIN/s: Eaf, ELL-associated factor (InterPro:IPR019194); BEST Arabidopsis thaliana protein match is: RNA polymerase II transcription elongation factor (TAIR:AT1G71080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:15187592..15188639 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31194.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.53 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.95 | ||||||||||||||||||||||||||||||||
| Length | 281 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDNHNEEPKI APEPNRWYNI TLGPTLLNNN HSYSPKFCTL RYEFKPASID STKPGLLHKS KDNKVTLEFQ NNQLNKPKVR FDGVSEDYND RDKDAILFFD 101: GENFRLEKLH RSVKRLKCLR VPDESASASR VVTKIVPPVE KPVKMAHIDI NNPVDFEEDV NIEDDNEEET LSRKEFQTGG LDIDINLPHP AEMEDDEIAV 201: VDINDDESYK GLNAAEALRA QVNAEAREES RKSSSSGSGR ESESSESGVE SSGSGSSSTS ESRKSGSEGG TASESGSRDS L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)