AT1G24340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAD/NAD(P)-binding oxidoreductase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
A locus involved in embryogenesis. Mutations in this locus result in embryo lethality. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
EMBRYO DEFECTIVE 2421 (EMB2421); FUNCTIONS IN: monooxygenase activity; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Monooxygenase, FAD-binding (InterPro:IPR002938); Has 5711 Blast hits to 5585 proteins in 1112 species: Archae - 4; Bacteria - 3878; Metazoa - 19; Fungi - 944; Plants - 66; Viruses - 0; Other Eukaryotes - 800 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:8635416..8638866 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78325.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.27 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||
| Length | 709 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAILGLIKRV TRITVNNSRV RVYPVRYFQR KDLSSTNLFN GEDAAKLPVL IVGAGPVGLV LSILLTKLGV KCAVVDKATS FSKHPQAHFI NNRSMEIFRE 101: LDGLAEEIER SQPPVDLWRK FIYCTSLSGS TLGTVDHMQP QDFEKVVSPA SVAHFSQYKL TNLLLKRLED LGFHVRGSKE SDGLEADSVV ARQILMGHEC 201: VGIDANKDSI TATVSFLKGG KHMKRNIQCS LLVGADGAGS AVRKLTVIEM RGERDLQKLV SVHFMSRELG EYLISNRPGM LFFIFNTDGI GVLVAHDLLQ 301: GEFVLQIPYY PPQQSLSDFS PEMCKMLIFN LVGHELSDLD VADIKPWVMH AEVAEKFMCC ENRVILAGDA AHRFPPAGGF GMNTGIQDAH NLAWKIAALV 401: QGSANSSILK TYETERRPIA LSNTSLSVQN FRAAMSVPSA LGLDPTVANS VHRFINKTVG SILPTGLQKA ILDNVFALGR AQLSESLLNE SNPLGNQRLS 501: RLKSIFEGGK SLQLQFPAED LGFRYLEGAI VPDNESEAGD PEVPSGRRRD YVPCAEPGSR LPHMYVKILS DSTREVIVST LDLVSTEKVE FLLIISPLQE 601: SYELAHATFK VAKEFMASVK VCVVWPSSDD GLERKSNSAL APWENYVDVM EVKKQNGEGT SWWSICKMSE RGSILVRPDQ HIAWRAKSGI TLDPTLHMRD 701: VFTIILGKQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)