AT1G20490.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 1.000 What is SUBAcon? |
|
||||||||
| Experimental Localisations and PPI |
|
||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||
| Description (TAIR10) | protein_coding : AMP-dependent synthetase and ligase family protein | ||||||||
| Curator Summary (TAIR10) |
|||||||||
| Computational Description (TAIR10) |
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1); Has 66005 Blast hits to 61269 proteins in 3543 species: Archae - 1113; Bacteria - 45325; Metazoa - 2980; Fungi - 3725; Plants - 2277; Viruses - 1; Other Eukaryotes - 10584 (source: NCBI BLink). | ||||||||
| Protein Annotations |
|
||||||||
| Coordinates (TAIR10) | chr1:-:7097958..7099672 | ||||||||
| Molecular Weight (calculated) | 48813.80 Da | ||||||||
| IEP (calculated) | 6.38 | ||||||||
| GRAVY (calculated) | -0.01 | ||||||||
| Length | 447 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MAYPERDLIV DPRSGFCKSN STFYSKRNPL CLPPNPSLDV TTFISSQPQR GTTAFIDAST GHRLTFSDLW RVVDRVADCL YHEVGIRRGD VVLILSPNSI 101: YIPVVCLSVM SLGAVVTTAN TLNTSGEISK QIAQSNPTLV FTTSQLAPKL AAAISVVLTD EEDEKRVELT SGVRVVGILS EMMKKETSGQ RVRDRVNQDD 201: TAMMLYSSGT TGTSKGVISS HRNLTAYVAK YIDDKWKRDE IFVCTVPMFH SFGLLAFAMG SVASGSTVVI LRRFGLDDMM QAVEKYKATI LSLAPPVLVA 301: MINGADQLKA KYDLTSLRKV RCGGAPLSKE VMDSFLEKYP TVNIFQGYAL TESHGSGAST ESVEESLKYG AVGLLSSGIE ARIVDPDTGR VMGVNQPGEL 401: WLKGPSISKG YFGNEEATNE TINLEGWLKL EISAISMKMG FYLLWID |
||||||||
| See Also |
|
||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)