AT1G20410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pseudouridine synthase family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity, RNA binding; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103); Has 545 Blast hits to 513 proteins in 206 species: Archae - 168; Bacteria - 1; Metazoa - 125; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7079049..7082504 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56555.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.96 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||
| Length | 504 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSGEKEPVAV ESAGLPNGLV SHGNSKTRRV YETARSLHTG AVKDLLSLGV CERCIFRLVS VEAFDSDISS VSTSTLRSWL KSGDDETSAS ESSCSTICIV 101: CLGILQFVFS DVKKELVKSD SSSDYVARIT DLVKQDRHEF DSFGLEVSVP STIMENERAL LSYLKGKYST EVWLQRDKIS VKDALKVLLL DQLKASLGAE 201: SDSSSFHIRL TYTKASDEAQ GASETTHESK RRKTDAENGS NCISENSFEK VYEPCIFSVH CNRMPIFFSG RYFKYSRNVS QSRWIIDDER MGEASVEEIL 301: GGNILPACLG DSYKFHAAGR EDIDVRMLGS GRPFLIEVQN SRQLPSEQSL KEVEEKINKS EKKLVGVKDL KCIGSQCWAM MREGEAEKQK QYVALVWISR 401: PLEEKDFNSI SCLKELKILQ KTPVRVLHRR SPLDREKIIH WMKVEKIKGH SHYFLLHLCT QAGTYIKEFV HGDLGRTTPS MGSILGCRAE IIQLDVTDVK 501: MGDP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)