AT1G17360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 9949 Blast hits to 7480 proteins in 576 species: Archae - 12; Bacteria - 1007; Metazoa - 3636; Fungi - 982; Plants - 444; Viruses - 50; Other Eukaryotes - 3818 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5947441..5951399 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 119241.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.67 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.02 | ||||||||||||||||||||||||
| Length | 1061 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKADTVLDYA VFELSPKYSR CELFVSSNEE REKLASGLIE PFVNHLRVIE SQASKRDQSS VRLEVEQSEN GESWFTRRTL ERFVQYVNSP EVLERVNTFD 0101: LEMSQLEAAR TLYSQDDGGV ADATQKELVR AIDLRLEAIK KDLTTAIAHA SANGFDPQTV SDLQRFADRF GAHHLNEACS KYISLSQRRP DLITKNVNTN 0201: TRTSVDETNI SQQLSTKNDK EENKDESLDE SSTVKPIHHT RRLSVQDRIN LFESKQKENS NSAGNKPVVV AKSTELKRPS SDTSSTVPAF PEKSVLRRWS 0301: IVSDMSFDFT MENKKSDSGS NEEGPLSTPS SIPDATFPKE SEENSKKDDD DVYSTISDDS QNQIDKPGNF MTDGNSMPRE DESYASKSHN VAQSSVMFPY 0401: RHSRSRSAHI AGGIDIKSDE RQSKGRKKEL FPSDKKQALT SPPKPVSAGS EQRQKSFGVE DDLVNADAAG KFDKNRVRAT SVDQTQRTRM PRESPPGFND 0501: ELKIKAQDLE KIFAEHQLRI LPGDQSAGND KDNGNVVMRR NLSELRFSDD SKGKLYEEYM KKRDAKLREE WSSKESKLKS MQEALDQSRT EMKAKFSAAS 0601: MKRQDSISST RQRAEKFRSF NSRTSSKKYQ HPISSLQSEE ENEKDKLVSG QSIGKGASKS SQVRKVPSPN GSSRVSKPSG KVSNTNTNTS GRGRKTSEIK 0701: LVTQSSLPKF SDLKKENTKP SSLAGRNTTT MMRTQARNGN KKTTKEDIPS PVMPRRPRSL RKSFSANIEF TELTTLYSDD MMNKERNQKQ NTDIDDVSEN 0801: LKNEAFDDTE SEAEEEEKEV LENPVKGEEE AREMETLVVE EDIGDETPSL TEIVENSSEN ENYTSLRSVS HVDLQANTLP SSTLQHNVAS LFDSPSESPL 0901: SWSSNLQHAF SYPHEHSDVD ASVDDSPMGS PASWSSRMRK KWGTTAQSPV IVPNSRKDLT KGIKRFLKFG KKTRAADSLM DWVSVTTSEG DDDCAYRSSD 1001: ELRKSRMASS QSQLSEDEQA SNNMIQPHHH QASFKVKDGD FKRSFFSLST FRSKGNDSKP R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)