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AT1G16630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.890
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16270.1); Has 10587 Blast hits to 5736 proteins in 617 species: Archae - 88; Bacteria - 963; Metazoa - 3686; Fungi - 820; Plants - 541; Viruses - 438; Other Eukaryotes - 4051 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXNIeggNOG:ENOG410YIIFEMBL:AC011808EMBL:AK229450
EMBL:BT010873EMBL:CP002684EnsemblPlants:AT1G16630EnsemblPlants:AT1G16630.1
entrez:838232GeneID:838232GO:GO:0016021Gramene:AT1G16630.1
hmmpanther:PTHR34775hmmpanther:PTHR34775:SF3HOGENOM:HOG000152584KEGG:ath:AT1G16630
ncoils:CoilOMA:FESHEVDPhylomeDB:Q9FX76PIR:D86301
Proteomes:UP000006548RefSeq:NP_173108.1STRING:3702.AT1G16630.1TAIR:AT1G16630
TMHMM:TMhelixUniGene:At.41878UniProt:Q9FX76
Coordinates (TAIR10) chr1:-:5682212..5684749
Molecular Weight (calculated) 93879.20 Da
IEP (calculated) 4.13
GRAVY (calculated) -0.75
Length 845 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSPAKNKI SVSPSSLFSS SSPSMPSRPN PKQRNSETGD LMRRSFRGNP FSADPSRRNS IGRECSNRVE IGDKENQNDK DQIANVVKGP TKGSKHFMSP
101: TISAVSKINP SPRKKILSDK NEVSRSFDKS HHQVQVKSSV SFSDVISIIG EDKDVDQICI DETKQLREEE SHDITVSDFD EILERKSNDN SSFKISPLPP
201: YVPCTFPVFE SHEVDPVVAP YDPKKNYLSP RPQFLHYKPN PKIEHRSDEC KQLEELFISE SSSSDTDLSA EREEEGQQEE EVASQEGVVA VEEQEDDGEE
301: RLEAAEEILD VDGEERLEAV ESDDEEEEVV VGESIEEEET HQISKQSRFS KTSMLLGWIL ALGVAYLLLV SSTTFSQQTI TDSPFYQFNI SPEIIMSASE
401: NFEQLGAKLR MWAESSFVYL DKLVSSLREE EGSVPFQFHN LTVLLEDKRL SDAVFQSTSV EIIVDGFIVD SLEVDIEEVN VGHQEPEEES ENSGEISLEA
501: VYEEDDNEVE QENEEGKVNL EIVDECDEQA EIKIATDTEV NGGERYSESL SEEGHGGQET DVVEGQEEYE ENDQNNMEEA ESDAQLLDDV QSAAISSNQQ
601: EQTGVANVET VQEEEGVGEI AGGSLSVSEE ATDVEHDGNE VEEEESGFGE VVNDAGSEDI LLSGQKKVLV LFSTMMVILA AVAAGFLLAK KKTKPVMLQH
701: EDGEPTAISA TKVVEHVPVE NLIRERLSSL NFKEEEEEVG DDRKREVSSF PSEMSFSFSK NKPLHSCSNK KDDLKEHQSG GGGKKSNDSG ESMASSASEY
801: SIGSVSYGSF TTYEKIQKRS GHEEKEMITP VRRSSRIRNH QHSGQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)