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AT1G14180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G18260.1); Has 165 Blast hits to 164 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 162; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2303eggNOG:ENOG410JRZ2EMBL:AK117979EMBL:CP002684
EnsemblPlants:AT1G14180EnsemblPlants:AT1G14180.1entrez:837977ExpressionAtlas:Q8GXX6
Gene3D:3.30.40.10GeneID:837977GO:GO:0008270GO:GO:0016829
Gramene:AT1G14180.1hmmpanther:PTHR31150hmmpanther:PTHR31150:SF7HOGENOM:HOG000243433
InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT1G14180OMA:HAECLDQ
Pfscan:PS50089PhylomeDB:Q8GXX6PROSITE:PS50089Proteomes:UP000006548
RefSeq:NP_563938.5SMART:SM00184SMR:Q8GXX6STRING:3702.AT1G14180.1
SUPFAM:SSF57850TAIR:AT1G14180UniGene:At.41986UniProt:Q8GXX6
Coordinates (TAIR10) chr1:+:4847828..4848970
Molecular Weight (calculated) 38354.80 Da
IEP (calculated) 8.95
GRAVY (calculated) -0.65
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSLCCVAAK SDRSNSTSGD FSFGLHEPYW RTNTSFSPPS SRWDVHGLMD GISCYGSSTS SNANVLRSPD LSQALHWTPN DFESATRRDQ IVKQLPGTSR
101: NVGIGDSEPG RNSSSRRFFL SKPVHPILHP SDNVRDTASD SADACSWSSG TPSSIDSVDV PEPVLDWNNN STKAQQVAAS STFKCGLCNR YLSQKSPWGS
201: RSIVRNRDMP VTGVLSCQHV FHVECLDQST PKIQRNDPLC PICTKQEGEH FKSNNIVPRL KPLYEDGPSS RPWGCAQAGD CVESAVNVPP KNTMMMINRN
301: RIRKSLSLRG NSSKDFSRKM KRSNSVAMEN LANQVSLVHS RGKEKVSW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)