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AT2G39880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 25
Curator
Summary (TAIR10)
Encodes a putative transcription factor (MYB25).
Computational
Description (TAIR10)
myb domain protein 25 (MYB25); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 109 (TAIR:AT3G55730.1); Has 8881 Blast hits to 7992 proteins in 491 species: Archae - 0; Bacteria - 0; Metazoa - 834; Fungi - 531; Plants - 5628; Viruses - 6; Other Eukaryotes - 1882 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AB493582EMBL:AC003000
EMBL:AF002109EMBL:AF175988EMBL:CP002685EnsemblPlants:AT2G39880
EnsemblPlants:AT2G39880.1entrez:818575Gene3D:1.10.10.60GeneID:818575
GO:GO:0003677GO:GO:0003700GO:GO:0006355GO:GO:0009555
Gramene:AT2G39880.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF511HOGENOM:HOG000238469
InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT2G39880
KO:K09422OMA:CGHGCCNPfam:PF00249Pfscan:PS51294
PhylomeDB:O04192PIR:T01017PROSITE:PS51294Proteomes:UP000006548
RefSeq:NP_181517.1SMART:SM00717SMR:O04192STRING:3702.AT2G39880.1
SUPFAM:SSF46689TAIR:AT2G39880tair10-symbols:AtMYB25tair10-symbols:MYB25
UniGene:At.11575UniProt:O04192
Coordinates (TAIR10) chr2:-:16647945..16649479
Molecular Weight (calculated) 40914.50 Da
IEP (calculated) 7.91
GRAVY (calculated) -0.66
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGEISRPPE LISSRNPCKS FENAIHKAVE AELAELAKSD ANGGGKSKVK GPWLPEQDEA LTRLVKMCGP RNWNLISRGI PGRSGKSCRL RWCNQLDPIL
101: KRKPFSDEEE HMIMSAQAVL GNKWSVIAKL LPGRTDNAIK NHWNSNLRRK PAEQWKIPLL MSNTEIVYQL YPSMVRRISN ASPKEHLPQE EETGVLSDDK
201: MDDEAKEPPR EQNSKTGVYR PVARMGAFSV CKPGYMAPCE GPLVQASRPD SLAGKFLQSL CYDPIIPSKC GHGCCNHQDS TTLSSSSVLG SEFVDYEEHS
301: SAELDKELIS ISNDLNNTAW IRSGKEAEQS LKADDQFRRE YAHSKFSGMV NNGVSSQMVR QDLRALS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)