AT2G39880.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : myb domain protein 25 | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a putative transcription factor (MYB25). | ||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
myb domain protein 25 (MYB25); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 109 (TAIR:AT3G55730.1); Has 8881 Blast hits to 7992 proteins in 491 species: Archae - 0; Bacteria - 0; Metazoa - 834; Fungi - 531; Plants - 5628; Viruses - 6; Other Eukaryotes - 1882 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:16647945..16649479 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 40914.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.91 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 367 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNGEISRPPE LISSRNPCKS FENAIHKAVE AELAELAKSD ANGGGKSKVK GPWLPEQDEA LTRLVKMCGP RNWNLISRGI PGRSGKSCRL RWCNQLDPIL 101: KRKPFSDEEE HMIMSAQAVL GNKWSVIAKL LPGRTDNAIK NHWNSNLRRK PAEQWKIPLL MSNTEIVYQL YPSMVRRISN ASPKEHLPQE EETGVLSDDK 201: MDDEAKEPPR EQNSKTGVYR PVARMGAFSV CKPGYMAPCE GPLVQASRPD SLAGKFLQSL CYDPIIPSKC GHGCCNHQDS TTLSSSSVLG SEFVDYEEHS 301: SAELDKELIS ISNDLNNTAW IRSGKEAEQS LKADDQFRRE YAHSKFSGMV NNGVSSQMVR QDLRALS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)