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AT1G48610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AT hook motif-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AT hook motif-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: A.T hook-like (InterPro:IPR020478), AT hook, DNA-binding motif (InterPro:IPR017956); Has 1118 Blast hits to 855 proteins in 246 species: Archae - 0; Bacteria - 355; Metazoa - 300; Fungi - 142; Plants - 155; Viruses - 6; Other Eukaryotes - 160 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0452eggNOG:KOG0672EMBL:AC020889EMBL:AY048274
EMBL:AY088093EMBL:AY133568EMBL:CP002684EnsemblPlants:AT1G48610
EnsemblPlants:AT1G48610.1entrez:841282ExpressionAtlas:Q94AD1GeneID:841282
Genevisible:Q94AD1GO:GO:0003677GO:GO:0005634InParanoid:Q94AD1
InterPro:IPR017956iPTMnet:Q94AD1KEGG:ath:AT1G48610ncoils:Coil
OMA:PKRNVAQPaxDb:Q94AD1Pfam:Q94AD1PRIDE:Q94AD1
PRINTS:PR00929PRO:PR:Q94AD1Proteomes:UP000006548RefSeq:NP_564531.1
SMART:SM00384STRING:3702.AT1G48610.1TAIR:AT1G48610UniGene:At.26193
UniProt:Q94AD1
Coordinates (TAIR10) chr1:-:17971027..17972798
Molecular Weight (calculated) 21675.00 Da
IEP (calculated) 11.99
GRAVY (calculated) -0.63
Length 212 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKTALTPPA SGSEVPRSGT PGDASGNKPQ TDATGVSATD TASQKRGRGR PPKAKSDSSQ IGAVSAKAST KPSGRPKRNV AQAVPSTSVA AAVKKRGRAK
101: RSTVTAAVVT TATGEGSRKR GRPKKDDVAA ATVPAETVVA PAKRRGRKPT VEVAAQPVRR TRKSTSVAPV AANVGDLKKR TALLQKKVKE AAAKLKQAVT
201: AIDEVQKLAD GM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)