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AT1G05030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.915
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27137770 (2016): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: mitochondrion, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: plastidic GLC translocator (TAIR:AT5G16150.3); Has 32095 Blast hits to 31550 proteins in 2260 species: Archae - 588; Bacteria - 15264; Metazoa - 5199; Fungi - 6752; Plants - 2455; Viruses - 0; Other Eukaryotes - 1837 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNQKeggNOG:KOG0254EMBL:AC005322EMBL:AK226802
EMBL:BT015814EMBL:BT020194EMBL:CP002684EnsemblPlants:AT1G05030
EnsemblPlants:AT1G05030.1entrez:839340GeneID:839340Genevisible:Q0WVE9
GO:GO:0008643GO:GO:0016021GO:GO:0022891GO:GO:0031969
hmmpanther:PTHR23503hmmpanther:PTHR23503:SF8HOGENOM:HOG000202868InParanoid:Q0WVE9
InterPro:IPR003663InterPro:IPR005828InterPro:IPR005829InterPro:IPR020846
iPTMnet:Q0WVE9KEGG:ath:AT1G05030OMA:DDPHWWRPaxDb:Q0WVE9
Pfam:PF00083Pfam:Q0WVE9Pfscan:PS50850PhylomeDB:Q0WVE9
PIR:C86184PRIDE:Q0WVE9PRINTS:PR00171PRO:PR:Q0WVE9
PROSITE:PS00217PROSITE:PS50850ProteinModelPortal:Q0WVE9Proteomes:UP000006548
Reactome:R-ATH-428790RefSeq:NP_171996.2scanprosite:PS00217SMR:Q0WVE9
STRING:3702.AT1G05030.1SUPFAM:SSF103473TAIR:AT1G05030TIGRfam:TIGR00879
TIGRFAMs:TIGR00879TMHMM:TMhelixUniGene:At.49852UniProt:Q0WVE9
Coordinates (TAIR10) chr1:-:1438324..1441385
Molecular Weight (calculated) 57205.80 Da
IEP (calculated) 9.02
GRAVY (calculated) 0.39
Length 524 amino acids
Sequence (TAIR10)
(BLAST)
001: MWVTNTVLLY RPNSMNRLTF SYPTRLAHSR KASSFSRFFR SSKRKKRVTT LSTKKPDDDH EISPVPPEKF SADLGWLSAF PHVSVASMAN FLFGYHIGVM
101: NGPIVSIARE LGFEGNSILE GLVVSIFIAG AFIGSIVAGP LVDKFGYRRT FQIFTIPLIL GALVSAQAHS LDEILCGRFL VGLGIGVNTV LVPIYISEVA
201: PTKYRGSLGT LCQIGTCLGI IFSLLLGIPA EDDPHWWRTM LYVASMPGFL LALGMQFAVE SPRWLCKVGR LDDAKVVIRN IWGGSEVEKA VEDFQSVMKN
301: SGSNLNSRWL ELLDKPHSRV AFIGGSLFVL QQFAGINGVL YFSSLTFQNV GITSGAQASL YVGVTNFAGA LCASYLIDKQ GRKKLLIGSY LGMAVSMFLI
401: VYAVGFPLDE DLSQSLSILG TLMYIFSFAI GAGPVTGLII PELSSNRTRG KIMGFSFSVH WVSNFLVGLF FLDLVEKYGV GTVYASFGSV SLLAAAFSHL
501: FTVETKGRSL EEIELSLNSR DDLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)