AT1G28320.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:peroxisome 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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FP Images |
Arabidopsis cell culture (peroxisomal marker)
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : DegP protease 15; | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Mutants in this gene are defective in the processing of pre-glyoxysomal malate dehydrogenase (pre-gMDH) to gMDH. | ||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
DEG15; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003); BEST Arabidopsis thaliana protein match is: DegP protease 1 (TAIR:AT3G27925.1); Has 3917 Blast hits to 3716 proteins in 1340 species: Archae - 34; Bacteria - 3021; Metazoa - 72; Fungi - 16; Plants - 139; Viruses - 0; Other Eukaryotes - 635 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:9920673..9924347 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 76129.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.02 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 709 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDVSKVVSFS RNFAVLVKVE GPDPKGLKMR KHAFHQYHSG NATLSASGIL LPRDIFLSGE VAAKVLFEAG QDMALVLTVA SVVEPFLTLG HRTSSSISQD 101: PVKLIPGAMI EIMVEGQLKS EKEAPFWVPA QLLSLVDVPV SSAALQSLIE ASSGSKDSGW DIGWSLVSAA NGSQPSINIE HYSKPLMQLD EPHNANFMAK 201: SATRMAILGV PLSLLGQPSM NFASSSSKGD TLVALGSPFG ILSPVNFFNS VSTGSIANSY PSGSLKKSLM IADVRCLPGM EGAPVFAKNG HLIGILIRPL 301: RQKNSGVEIQ LVVPWGAITT ACSHLLLEEP SVEGKASQWG SEVLSVKSDA SIPAQVAIEK AMESVCLITV NDGVWASGII LNEHGLILTN AHLLEPWRYG 401: KGGVYGEGFK PYVLGAEEFS STGSKFWEQK SQTLPRKAPR NHYSSVGENI REYKHNFLQT GHRDIRVRLC HLDSWTWCPA NVVYICKEQL DIALLQLEYV 501: PGKLQPITAN FSSPPLGTTA HVVGHGLFGP RCGLSPSICS GVVAKVVHAK RRLNTQSISQ EVAEFPAMLE TTAAVHPGGS GGAVLNSSGH MIGLVTSNAR 601: HGAGTVIPHL NFSIPCAVLA PIFKFAEDMQ NTTILQTLDQ PSEELSSIWA LMPSLSPKTE QSLPNLPKLL KDGNNKQTKG SQFAKFIAET QDMFVKPTKL 701: SRDVIPSKL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)