AT1G65420.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 0.999 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Protein of unknown function (DUF565) | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Chloroplast localized YCF20-like gene involved in nonphotochemical quenching. Has overlapping functions with npq6. | ||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
NONPHOTOCHEMICAL QUENCHING 7 (NPQ7); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF565 (InterPro:IPR007572); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF565) (TAIR:AT3G56830.1); Has 195 Blast hits to 195 proteins in 63 species: Archae - 0; Bacteria - 57; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:24297669..24298374 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 21398.60 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.78 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.28 | ||||||||||||||||||||||||||||||||||||||||
Length | 197 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MACQIQASRV FPVLEIEKGL SFMINVFHRR IKASSITLTS FPYPMKSFQI RRPNRKIAFA LDTGSSIPGD SGEGQEMNGD RTGLGSTRLG RIAIAGGKQL 101: LGKINSARKN FPMKIFLLLL GFYTANALAT ILGQTGDWDV LVAGIVVAAI EGIGMLMYKK PSSSMFSGKL QSFVVFMNFW KAGVCLGLFV DAFKLGS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)