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AT1G65420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF565)
Curator
Summary (TAIR10)
Chloroplast localized YCF20-like gene involved in nonphotochemical quenching. Has overlapping functions with npq6.
Computational
Description (TAIR10)
NONPHOTOCHEMICAL QUENCHING 7 (NPQ7); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF565 (InterPro:IPR007572); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF565) (TAIR:AT3G56830.1); Has 195 Blast hits to 195 proteins in 63 species: Archae - 0; Bacteria - 57; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXIJeggNOG:ENOG4111W7GEMBL:AC004512EMBL:AY088215
EMBL:BT025776EMBL:CP002684EnsemblPlants:AT1G65420EnsemblPlants:AT1G65420.1
entrez:842853GeneID:842853Genevisible:O80813GO:GO:0009507
GO:GO:0010196GO:GO:0016021Gramene:AT1G65420.1hmmpanther:PTHR33787
hmmpanther:PTHR33787:SF4HOGENOM:HOG000155497InParanoid:O80813InterPro:IPR007572
KEGG:ath:AT1G65420OMA:INVFHRRPaxDb:O80813Pfam:O80813
Pfam:PF04483PhylomeDB:O80813PIR:T02365PRIDE:O80813
PRO:PR:O80813Proteomes:UP000006548RefSeq:NP_564851.1STRING:3702.AT1G65420.1
TAIR:AT1G65420tair10-symbols:NPQ7TMHMM:TMhelixUniGene:At.28694
UniGene:At.66795UniProt:O80813
Coordinates (TAIR10) chr1:-:24297669..24298374
Molecular Weight (calculated) 21398.60 Da
IEP (calculated) 10.78
GRAVY (calculated) 0.28
Length 197 amino acids
Sequence (TAIR10)
(BLAST)
001: MACQIQASRV FPVLEIEKGL SFMINVFHRR IKASSITLTS FPYPMKSFQI RRPNRKIAFA LDTGSSIPGD SGEGQEMNGD RTGLGSTRLG RIAIAGGKQL
101: LGKINSARKN FPMKIFLLLL GFYTANALAT ILGQTGDWDV LVAGIVVAAI EGIGMLMYKK PSSSMFSGKL QSFVVFMNFW KAGVCLGLFV DAFKLGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)