AT1G01225.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.985 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NC domain-containing protein-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NC domain-containing protein-related; CONTAINS InterPro DOMAIN/s: NC (InterPro:IPR007053); BEST Arabidopsis thaliana protein match is: NC domain-containing protein-related (TAIR:AT4G00905.1); Has 173 Blast hits to 172 proteins in 34 species: Archae - 0; Bacteria - 24; Metazoa - 5; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:96064..97242 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 28401.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.48 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||
| Length | 260 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGLLTNKIER EELKPGDHIY TYRAIFAYSH HGIFVGGSKV VHFRPEHNPM DSSTSSISSS SSEDICSIFP DCGFRQPDSG VVLSCLDCFL KNGSLYCFEY 101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV 201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)