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AT4G28950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RHO-related protein from plants 9
Curator
Summary (TAIR10)
A member of ROP GTPase gene family.
Computational
Description (TAIR10)
RHO-related protein from plants 9 (ROP9); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: RHO-related protein from plants 10 (TAIR:AT3G48040.1); Has 24641 Blast hits to 24616 proteins in 674 species: Archae - 9; Bacteria - 56; Metazoa - 12738; Fungi - 3855; Plants - 2680; Viruses - 20; Other Eukaryotes - 5283 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1100eggNOG:KOG0393EMBL:AF079484EMBL:AF115474
EMBL:AL078469EMBL:AL161574EMBL:CP002687EnsemblPlants:AT4G28950
EnsemblPlants:AT4G28950.1entrez:829016EvolutionaryTrace:O82480ExpressionAtlas:O82480
Gene3D:3.40.50.300GeneID:829016Genevisible:O82480GO:GO:0005525
GO:GO:0005622GO:GO:0005886GO:GO:0007264GO:GO:0009738
Gramene:AT4G28950.1hmmpanther:PTHR24072hmmpanther:PTHR24072:SF127HOGENOM:HOG000233974
InParanoid:O82480InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417
KEGG:ath:AT4G28950KO:K04392OMA:DDKGYLAPaxDb:O82480
PDB:2J0VPDBsum:2J0VPfam:O82480Pfam:PF00071
Pfscan:PS51420PhylomeDB:O82480PIR:T08950PRIDE:O82480
PRO:PR:O82480PROSITE:PS51420ProteinModelPortal:O82480Proteomes:UP000006548
RefSeq:NP_194624.1SMR:O82480STRING:3702.AT4G28950.1SUPFAM:SSF52540
TAIR:AT4G28950tair10-symbols:ARAC7tair10-symbols:ATRAC7tair10-symbols:ATROP9
tair10-symbols:RAC7tair10-symbols:ROP9TIGRfam:TIGR00231TIGRFAMs:TIGR00231
UniGene:At.3402UniProt:O82480UniProt:Q1LYV5
Coordinates (TAIR10) chr4:+:14278289..14279705
Molecular Weight (calculated) 23043.80 Da
IEP (calculated) 9.60
GRAVY (calculated) -0.14
Length 209 amino acids
Sequence (TAIR10)
(BLAST)
001: MSASKFIKCV TVGDGAVGKT CMLICYTSNK FPTDYIPTVF DNFSANVAVD GQIVNLGLWD TAGQEDYSRL RPLSYRGADI FVLAFSLISK ASYENVLKKW
101: MPELRRFAPN VPIVLVGTKL DLRDDKGYLA DHTNVITSTQ GEELRKQIGA AAYIECSSKT QQNVKAVFDT AIKVVLQPPR RKEVPRRRKN HRRSGCSIAS
201: IVCGGCTAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)