suba logo
AT5G25090.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.940
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 12805588
AmiGO : plasma membrane 17317660
AmiGO : plasma membrane 17644812
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 12805588
TAIR : plasma membrane 17644812
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31541795 (2020): plasma membrane
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26748395 (2016): plasma membrane
  • PMID:24030099 (2013): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16602701 (2006): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:14517339 (2003): plasma membrane
  • PMID:12805588 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : early nodulin-like protein 13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
early nodulin-like protein 13 (ENODL13); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: early nodulin-like protein 15 (TAIR:AT4G31840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY7PeggNOG:ENOG410YW92EMBL:AC005964EMBL:AY086719
EMBL:CP002688EnsemblPlants:AT5G25090EnsemblPlants:AT5G25090.1entrez:832580
Gene3D:2.60.40.420GeneID:832580Genevisible:Q8LC95GO:GO:0005886
GO:GO:0009055GO:GO:0009506GO:GO:0031225GO:GO:0046658
Gramene:AT5G25090.1hmmpanther:PTHR33021hmmpanther:PTHR33021:SF48HOGENOM:HOG000237627
InParanoid:Q8LC95InterPro:IPR003245InterPro:IPR008972KEGG:ath:AT5G25090
OMA:AYINCNTPaxDb:Q8LC95Pfam:PF02298Pfam:Q8LC95
Pfscan:PS51485PhylomeDB:Q8LC95PRIDE:Q8LC95PRO:PR:Q8LC95
ProDom:PD003122PROSITE:PS51485ProteinModelPortal:Q8LC95Proteomes:UP000006548
RefSeq:NP_197891.1SMR:Q8LC95STRING:3702.AT5G25090.1SUPFAM:SSF49503
TAIR:AT5G25090tair10-symbols:AtENODL13tair10-symbols:ENODL13TMHMM:TMhelix
UniGene:At.19097UniGene:At.30929UniProt:Q8LC95
Coordinates (TAIR10) chr5:-:8647117..8647755
Molecular Weight (calculated) 19768.70 Da
IEP (calculated) 9.19
GRAVY (calculated) 0.10
Length 186 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQRTLVATF FLIFFLLTNL VCSKEIIVGG KTSSWKIPSS PSESLNKWAE SLRFRVGDTL VWKYDEEKDS VLQVTKDAYI NCNTTNPAAN YSNGDTKVKL
101: ERSGPYFFIS GSKSNCVEGE KLHIVVMSSR GGHTGGFFTG SSPSPAPSPA LLGAPTVAPA SGGSASSLTR QVGVLGFVGL LAIVLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)