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AT5G58000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.992
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Reticulon family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Reticulon family protein; LOCATED IN: endoplasmic reticulum, chloroplast; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT2G20590.1); Has 1128 Blast hits to 1113 proteins in 146 species: Archae - 0; Bacteria - 2; Metazoa - 759; Fungi - 49; Plants - 88; Viruses - 4; Other Eukaryotes - 226 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IRP6eggNOG:ENOG4111T8TEMBL:AB013396EMBL:AK221805EMBL:CP002688EnsemblPlants:AT5G58000EnsemblPlants:AT5G58000.1
entrez:835911GeneID:835911GO:GO:0005789GO:GO:0016021Gramene:AT5G58000.1hmmpanther:PTHR10994hmmpanther:PTHR10994:SF84
HOGENOM:HOG000176956InParanoid:Q56X72InterPro:IPR003388iPTMnet:Q56X72KEGG:ath:AT5G58000OMA:AHRSENSPaxDb:Q56X72
Pfam:PF02453Pfam:Q56X72Pfscan:PS50845PRIDE:Q56X72PRO:PR:Q56X72PROSITE:PS50845ProteinModelPortal:Q56X72
Proteomes:UP000006548RefSeq:NP_200608.3SMR:Q56X72STRING:3702.AT5G58000.1TAIR:AT5G58000TMHMM:TMhelixUniGene:At.29301
UniProt:Q56X72
Coordinates (TAIR10) chr5:+:23477416..23479496
Molecular Weight (calculated) 55197.60 Da
IEP (calculated) 6.28
GRAVY (calculated) -0.44
Length 487 amino acids
Sequence (TAIR10)
(BLAST)
001: MTPRRSLSSS DSNDKSPSVS VVAKKARSES VEGIEKKTTP GRVKKIRSEV CTTIVKAGEF DSVALRKVNS LPSPNSEKSD TKTEQEVTII ENSKIPEEVK
101: EFGVCQEMIV SAKSNENEQI DNGDQEIGDQ DDYEEDGDEE EEREVEKKSV DVKEINVAKE NRVGGVEIKK FSQFQNRTSP SPSSVRKISP PVIKRATSVY
201: SAPPNSTSST DRFAEQEDNF THSQSKLQSL VDLVMWRDVS RSTLVFGFGT FLIISSSYAN DLNFSFISVV AYMGLIYLGL MFVLKSLIHR GMVEEERHKV
301: VGVREEDVKR MLRLIMPYLN ESLHQLRALF SGDPSTTLKM GVVLFVLARC GSSITLWNLA KFGFLGAFTI PKIFISYSTH FSAYGNFWMR RFRDAWESCN
401: HKKAVALALF TLVWNLSSVT ARVWAAFMLL VAFRYYQHKM IWTTDQADDD EDDNEEEEAE EEKEQVPPKH KRAPPHMMMP NKLKKIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)