AT5G58000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Reticulon family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Reticulon family protein; LOCATED IN: endoplasmic reticulum, chloroplast; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT2G20590.1); Has 1128 Blast hits to 1113 proteins in 146 species: Archae - 0; Bacteria - 2; Metazoa - 759; Fungi - 49; Plants - 88; Viruses - 4; Other Eukaryotes - 226 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:23477416..23479496 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55197.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.28 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||
| Length | 487 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTPRRSLSSS DSNDKSPSVS VVAKKARSES VEGIEKKTTP GRVKKIRSEV CTTIVKAGEF DSVALRKVNS LPSPNSEKSD TKTEQEVTII ENSKIPEEVK 101: EFGVCQEMIV SAKSNENEQI DNGDQEIGDQ DDYEEDGDEE EEREVEKKSV DVKEINVAKE NRVGGVEIKK FSQFQNRTSP SPSSVRKISP PVIKRATSVY 201: SAPPNSTSST DRFAEQEDNF THSQSKLQSL VDLVMWRDVS RSTLVFGFGT FLIISSSYAN DLNFSFISVV AYMGLIYLGL MFVLKSLIHR GMVEEERHKV 301: VGVREEDVKR MLRLIMPYLN ESLHQLRALF SGDPSTTLKM GVVLFVLARC GSSITLWNLA KFGFLGAFTI PKIFISYSTH FSAYGNFWMR RFRDAWESCN 401: HKKAVALALF TLVWNLSSVT ARVWAAFMLL VAFRYYQHKM IWTTDQADDD EDDNEEEEAE EEKEQVPPKH KRAPPHMMMP NKLKKIS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)