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AT4G23020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11780.1); Has 146 Blast hits to 146 proteins in 40 species: Archae - 0; Bacteria - 16; Metazoa - 17; Fungi - 4; Plants - 67; Viruses - 20; Other Eukaryotes - 22 (source: NCBI BLink).
Protein Annotations
EMBL:CP002687EnsemblPlants:AT4G23020EnsemblPlants:AT4G23020.1entrez:828401
ExpressionAtlas:F4JMR2GeneID:828401Gramene:AT4G23020.1hmmpanther:PTHR33623
hmmpanther:PTHR33623:SF3ProteinModelPortal:F4JMR2Proteomes:UP000006548RefSeq:NP_194033.4
TAIR:AT4G23020UniGene:At.54484UniProt:F4JMR2
Coordinates (TAIR10) chr4:-:12066331..12068442
Molecular Weight (calculated) 49083.50 Da
IEP (calculated) 4.86
GRAVY (calculated) -0.69
Length 425 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSISSSDHP LPVSKKRLKP LILRDFLLDD LSSCSSNGFK SFPRLLNAEI QRSGMFHHNR RITCGLAFSH AVHKASTALL TAVKLLPFPS SVKSQSRDRD
101: NKKGLFSRSF WKKLSRRELN VDVGEKERRT DDREEEIQRC RSFAEFLQES QDQLSDQIYY ISPTDLFSGE ATLSKDAVGD SSSFSSEDSE VTQSSSGVIV
201: VMMSGDCVGS HVSDGSSLND NTEECENEEK EQLSPISILD CPFQDDAISP PSHHKETYEK KQMRKRRRLE SLVRLEPVDL EKRIEKYEER QDYKSHIIEI
301: EEDQSEIRAN RLFALVKSRI IEEQNQLLAS HVVDNVLLDF FKENNNNETR DEDKLVEIVE EWVMRRQDDE YNMFMSWKVS EKREIYVKEM KWGCINGDEK
401: EYVVEELGNG FLTSLVDELI HDISL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)