AT5G57070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.689 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G72790.1); Has 43553 Blast hits to 23221 proteins in 1113 species: Archae - 87; Bacteria - 4345; Metazoa - 18926; Fungi - 6211; Plants - 7264; Viruses - 1427; Other Eukaryotes - 5293 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:23096221..23097948 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63853.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.24 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||||||||||||||||||
| Length | 575 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDDQPPLIWP QFDSTGYARR RSSIPAILVP AMIGVTSAAI FLVFVTFVVP TFLSVTSQIL QPASVKRGWD SINVVLVVFA ILCGVLARRN DDGLSSESLH 101: GGEEEEVGGG AVTNGEMTVG EISKISSSSS TVSEQWFDDV YDSDRLKIYE SVSSRSFSHG LPVTGNVPLR RSSSSYPDLR QGVFRETGDR RFRFYDDFEI 201: DKYRSQDSSS YQQFQNLSKT EIEEEESEPK EIQIDTFVVK PSSPPQQPPA TPPPPPPPPP VEVPQKPRRT HRSVRNRDLQ ENAKRSETKF KRTFQPPPSP 301: PPPPPPPPPQ PLIAATPPRK QGTLQRRKSN AAKEIKMVFA SLYNQGKKKK KLQKSKRKER IESSPMVEDV TEPPQYQSLI PPPSPPPPPP PPPPPLRSSQ 401: SVFYGLFKKG VKSNKKIHSV PAPPPPPPPR YTQFDPQTPP RRVKSGRPPR PTKPKNFNEE NNGQGSPLIQ ITPPPPPPPP FRVPPLKYVV SGDFAKIRSN 501: QSSRCSSPER EVFDIGWGLE LTQSDGGVET KAAVSGGGMP GFCPSPDVDT KADNFIARLR DEWRLDKINS VNRKR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)