AT5G27970.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.890 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: HOPM interactor 7 (TAIR:AT3G43300.1). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:10004720..10015619 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 184062.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.24 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.09 | ||||||||||||||||||||||||||||||||||||
| Length | 1658 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MALVAALEAD LRALSAEARR RYPAVKDGAE HAILKLRSSS SASDLSSNED ILRIFLMACG VRNTKLSVIG LSCLQKLISH DAVEPSSLKE ILYTLKDHSE 0101: MAEENIQLKT LQTILIIFQS RLHPETEDNM VLGLSICLTL LDNNRPPSVY NTAAATFRQA VALIFDQVVS AESLPMPKFG SSSQTARTGS VTGDLSQNIN 0201: NSGPLEKDVI GGRLTIRDTL SETGKLGLRL LEDLTASAAG GSAAWLHVTS LPRTFSLELI EFVLSNYISV FKILLPYEQV LRHQICSLLM TSLRTSSELE 0301: GEMVEPYFRR LVLRSVAHII RLYSSSLITE CEVFLSMLVK ATFLDLPLWH RILVLEILRG FCVEARTLRI LFQNFDMKLP SRSFFTLQLK KHPKNTNVVE 0401: SMVKALARVV SSIQFQETSE ESLAAVAGMF SSKAKGIEWI LDNDASSAAV LVASEAHAIT LAIEGLLGVV FTVATLTDEA VDVGELESPR YEHLPSSDYT 0501: GKTSLLCISM VDSLWLTILD AFSLILSRSQ GEAIVLEILK GYQAFTQACG VLHAVEPLNS FLASLCKFTI VLPTDVERKS SVVQSPVSKR SEVQVDLKDV 0601: IVLTPKNVQA LRTLFNIAHR LHNVLGPSWV LVLETLAALD RAIHSPHATT QEVATAVPKL TREPSRQYAD FSILSSLNSQ LFESSALMQV SSVKSLLSAL 0701: HMLSHQSMTE TSGSVSSASS KQIGSISFSV DRMISILVNN LHRVEPLWDQ VVGHFLELAE HSNQNLRNMA LDALDQSICA VLGSEQFGED PARSRDATLD 0801: VDSKSTEVKS VECAVLSSLR VLYFSAQKAD VRVGSLKILL HVLERCGEKL YYSWSSILEM LRSVADASEK DVATLGFQSL RVIMSDGLPT LPEDCLHVCI 0901: DVTGAYSAQK TDLNISLTAI GLLWTLTDFV AKGLHHGSLV EKGSGFNNAD STPQQTNGED GEKHMGSNSG KSDYEAPIQV VNHEKLLFLV FSLIQKLVDD 1001: ERPEVRNSAV RTFFQILGSH GNKLSKSMWE DCLWNYIFPM LDGASHKAAT SSKDEWQGKE IGTRGGKAVH MLIHHSRNSA QKQWDETFVL VLGGIARLFR 1101: SYFPLLESLP NFWSGWESLL AFVKKSIFNG SKEVSLAAIN CLQTAVVSHC VKGNLQLRYL NSVLDVYELV FQKSSSYTGD TAAKVKQEIL HGLGELYVQS 1201: SKMFDDKMYM QLLGIVDLAI KQAIINSENF ETEYGHVPPV LRHVLEILPS LGPPEHLSSM WLILLREFLH YLPRVDSVLP NDEGSEVLEQ KADASSETIP 1301: TTRITTNMFA EKLIPALIEL LLQAPAVEKY ILFPEVIQNL RRCMMTRRDN PDGSLWKVAA EGFNRLLVED VKLCSVGGET ELKISKTARI RIWKEIGDVY 1401: DIFLVGYCGR ALSSNSLPAA TLKANETLEI ALLNGLGDII LKSTVDAPRE VLERLVSTLD RCASRTCSLP VETVELMPAH CSRFSLTCLQ KLFSLSSFSS 1501: ETENWHSTRA EVSKISITTL MARCEFILSR FLIDENNLGN RPIPTARLEE IIFTLQELYR LSIHPEVASV LPLQPYLKNV LREDNRDTRA HLLVLFPSLC 1601: EIVLSREMRV RELVQILLRA VATELGLEKR VLNYSVCCIL QYAILRDFML VWFNKVLC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)