AT5G19530.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.986 What is SUBAcon? |
|
||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||
| Description (TAIR10) | protein_coding : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | ||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a spermine synthase. Required for internode elongation and vascular development, specifically in the mechanism that defines the boundaries between veins and nonvein regions. This mechanism may be mediated by polar auxin transport. Though ACL5 has been shown to function as a spermine synthase in E. coli, an ACL5 knockout has no effect on the endogenous levels of free and conjugated polyamines in Arabidopsis, suggesting that ACL5 may have a very specific or altogether different in vivo function. | ||||||||||||||||
| Computational Description (TAIR10) |
ACAULIS 5 (ACL5); CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 1 (TAIR:AT1G23820.1); Has 4823 Blast hits to 4823 proteins in 1442 species: Archae - 170; Bacteria - 2608; Metazoa - 258; Fungi - 194; Plants - 443; Viruses - 0; Other Eukaryotes - 1150 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
|
||||||||||||||||
| Coordinates (TAIR10) | chr5:-:6589176..6591070 | ||||||||||||||||
| Molecular Weight (calculated) | 37832.90 Da | ||||||||||||||||
| IEP (calculated) | 5.26 | ||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||
| Length | 332 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFGNGFPEIH KATSPTQTLH SNQQDCHWYE ETIDDDLKWS FALNSVLHQG TSEYQDIALL DTKRFGKVLV IDGKMQSAER DEFIYHECLI HPALLFHPNP 101: KTVFIMGGGE GSAAREILKH TTIEKVVMCD IDQEVVDFCR RFLTVNSDAF CNKKLELVIK DAKAELEKRE EKFDIIVGDL ADPVEGGPCY QLYTKSFYQN 201: ILKPKLSPNG IFVTQAGPAG IFTHKEVFTS IYNTMKQVFK YVKAYTAHVP SFADTWGWVM ASDHEFDVEV DEMDRRIEER VNGELMYLNA PSFVSAATLN 301: KTISLALEKE TEVYSEENAR FIHGHGVAYR HI |
||||||||||||||||
| See Also |
|
||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)