AT5G18230.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transcription regulator NOT2/NOT3/NOT5 family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transcription regulator NOT2/NOT3/NOT5 family protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: negative regulation of transcription, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282), CCR4-NOT complex, subunit 3/ 5 (InterPro:IPR012270), Not CCR4-Not complex component, N-terminal (InterPro:IPR007207); BEST Arabidopsis thaliana protein match is: NOT2 / NOT3 / NOT5 family (TAIR:AT1G07705.2); Has 3972 Blast hits to 2940 proteins in 410 species: Archae - 18; Bacteria - 365; Metazoa - 1231; Fungi - 912; Plants - 255; Viruses - 11; Other Eukaryotes - 1180 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6021610..6027031 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93257.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.15 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||
| Length | 845 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGASRKLQGE IDRVLKKVQE GVDVFDSIWN KWNVYDTDNV NQKEKFEADL KKEIKKLQRY RDQIKTWIQS SEIKDKKVSA SYEQSLVDAR KLIEKEMERF 101: KICEKETKTK AFSKEGLGQQ PKTDPKEKAK SETRDWLNNV VSELESQIDS FEAELEGLSV KKGKTRPPRL THLETSITRH KDHIIKLELI LRLLDNDELS 201: PEQVNDVKDF LDDYVERNQD DFDEFSDVDE LYSTLPLDEV EGLEDLVTAG PLVKGTPLSM KSSLAASASQ VRSISLPTHH QEKTEDTSLP DSSAEMVPKT 301: PPPKNGAGLH SAPSTPAGGR PSLNVPAGNV SNTSVTLSTS IPTQTSIESM GSLSPVAAKE EDATTLPSRK PPSSVADTPL RGIGRVGIPN QPQPSQPPSP 401: IPANGSRISA TSAAEVAKRN IMGVESNVQP LTSPLSKMVL PPTAKGNDGT ASDSNPGDVA ASIGRAFSPS IVSGSQWRPG SPFQSQNETV RGRTEIAPDQ 501: REKFLQRLQQ VQQGHGNLLG IPSLSGGNEK QFSSQQQNPL LQQSSSISPH GSLGIGVQAP GFNVMSSASL QQQSNAMSQQ LGQQPSVADV DHVRNDDQSQ 601: QNLPDDSASI AASKAIQSED DSKVLFDTPS GMPSYMLDPV QVSSGPDFSP GQPIQPGQSS SSLGVIGRRS NSELGAIGDP SAVGPMHDQM HNLQMLEAAF 701: YKRPQPSDSE RPRPYSPRNP AITPQTFPQT QAPIINNPLL WERLGSDAYG TDTLFFAFYY QQNSYQQYLA AKELKKQSWR YHRKFNTWFQ RHKEPKIATD 801: EYEQGAYVYF DFQTPKDENQ EGGWCQRIKN EFTFEYSYLE DELVV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)