AT5G10940.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.982 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transducin family protein / WD-40 repeat family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G45620.1). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:3448890..3454127 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 83531.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.72 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||
| Length | 754 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDNLSFHDGN IFNLLHTRSQ DPSHEVDQRM QFHSSLVRRL SQEQELEGHQ GCVNALAWNS NGSLLISGSD DLRINIWNYS SRKLLHSIDT GHTANIFCTK 101: FVPETSDELV VSGAGDAEVR LFNTSRLSGR AEDDNAIIPS ALYQCHTRRV KKLAVEPGNP NVVWSASEDG TLRQHDFRES TSCPPAGTAH QECRSVLLDL 201: RSGAKRALAD PPKQTLSLKS CDISATRPHL LLVGGSDAFA RLYDRRMLPP LASSRKRMPP PPCVNYFCPM HLSERGRTNL HLTHVTFSPN GEEVLLSYSG 301: EHVYLMNVNN GTGIMQYTPG DVDNLFSFSN NLHDVESPPQ VSTTPQNGFH RSSNAATVKK CTELVEIAKW SLEEGTDVFY AIEAANEVLD AHSNDIESAL 401: RHECLCTRAA LLLKRKWKND AHMAVRDCHN ARRIDASSFK AHYYMSEALQ QLGKCKEALD FATAAQHMNP SDADIVAKVE SIKRDLQAAG AEKNEETGAG 501: TTRVLSLSDI LYRSEANSDS SHDMSRSERE DSDYDEELEL DIQTSLSDDE GRDTDSNSMR GSLNLRIHRV GDDKPMENTV DNASSGTASS SQNDRTSYQP 601: EGAIDMKRRY VGHCNVGTDI KQASFLGQRG EYIASGSDDG RWFIWEKQTG RLMKVLVGDE SVLNCIQCHP FDSVVATSGI DNTIKIWSPT ASVPSIVAGG 701: SAGPATANVV EVMESNQQKL SRNRENPLSV ELMQRFRMQE FAEGNFHPFE CTQS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)