AT5G06440.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3); Has 157 Blast hits to 155 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 6; Plants - 99; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:1964641..1966807 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55095.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.03 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||
| Length | 479 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQKKREICGY RDKLDKTLSS PELTNHETLK SLLRNQLEEC DENILDKRTD DVSKLLSKLR SVSMTDHQVS KLTNDGDWKL KHDLEDCRVM YREGLDGSPF 101: HTLLVEGYMD GPIHECLCVS WESTLYKKWW PQYAFPPFRI LKSTCLQKVG VGEQICLARM KVPWPLTERE MILHYFSFEY FKDGLVVILL NTISDLNSIG 201: VSSTDIIIPE SPDAVRMDLV GGFVLQKVTP QRSYFRTIGD MDIKLDLMPP SLMNFISRQL IGNGFRLYKK SVASVAKFDE DYSRALTDPL YTKIRRALYS 301: TDEAVEEEPK LETNEVNGVT LPKHEHENNG DASVNKPVHC RRTVPEIEEE EESEESVYSE DGNEIAKTHV DMRRRFCVSP EVEQALGTLD RVIFMVRNIT 401: PVPETEELSP NRADDQAKQV SVLENIESVP QTQESSSDFS EEEKREEDTG QNQGMLNKGK NSSLQRKRKA RCFAFRSWL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)