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AT4G36800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.872
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RUB1 conjugating enzyme 1
Curator
Summary (TAIR10)
RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1.
Computational
Description (TAIR10)
RUB1 conjugating enzyme 1 (RCE1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), RUB1 conjugating enzyme Ubc12 (InterPro:IPR015580); BEST Arabidopsis thaliana protein match is: Ubiquitin-conjugating enzyme family protein (TAIR:AT2G18600.1); Has 8473 Blast hits to 8470 proteins in 386 species: Archae - 0; Bacteria - 0; Metazoa - 3871; Fungi - 1731; Plants - 1533; Viruses - 20; Other Eukaryotes - 1318 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G36800-MONOMERBioCyc:ARA:GQT-910-MONOMERBioGrid:15114EC:6.3.2.-eggNOG:ENOG410XS81eggNOG:KOG0420EMBL:AF202771
EMBL:AK230295EMBL:AL161590EMBL:AY048210EMBL:AY097381EMBL:CP002687EMBL:Z99708EnsemblPlants:AT4G36800
EnsemblPlants:AT4G36800.1EnsemblPlants:AT4G36800.2entrez:829833Gene3D:3.10.110.10GeneID:829833Genevisible:Q9SDY5GO:GO:0005524
GO:GO:0005737GO:GO:0009733GO:GO:0016874GO:GO:0019788GO:GO:0045116hmmpanther:PTHR24067hmmpanther:PTHR24067:SF123
HOGENOM:HOG000233456InParanoid:Q9SDY5IntAct:Q9SDY5InterPro:IPR000608InterPro:IPR016135InterPro:IPR023313KEGG:ath:AT4G36800
KO:K10579OMA:LFHLFTQPaxDb:Q9SDY5Pfam:PF00179Pfam:Q9SDY5Pfscan:PS50127PhylomeDB:Q9SDY5
PIR:E85434PRIDE:Q9SDY5PRO:PR:Q9SDY5PROSITE:PS00183PROSITE:PS50127ProteinModelPortal:Q9SDY5Proteomes:UP000006548
RefSeq:NP_001154289.1RefSeq:NP_568008.4scanprosite:PS00183SMR:Q9SDY5STRING:3702.AT4G36800.1SUPFAM:SSF54495TAIR:AT4G36800
tair10-symbols:RCE1UniGene:At.11882UniGene:At.24761UniGene:At.43436unipathway:UPA00143UniPathway:UPA00885UniProt:Q9SDY5
Coordinates (TAIR10) chr4:-:17341237..17342148
Molecular Weight (calculated) 20787.80 Da
IEP (calculated) 7.98
GRAVY (calculated) -0.44
Length 184 amino acids
Sequence (TAIR10)
(BLAST)
001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)