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AT5G59890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : actin depolymerizing factor 4
Curator
Summary (TAIR10)
actin depolymerizing factor 4 (ADF4) mRNA, complete cds
Computational
Description (TAIR10)
actin depolymerizing factor 4 (ADF4); FUNCTIONS IN: actin binding; INVOLVED IN: defense response signaling pathway, resistance gene-dependent, defense response to bacterium; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 1 (TAIR:AT3G46010.1); Has 1469 Blast hits to 1466 proteins in 267 species: Archae - 0; Bacteria - 5; Metazoa - 601; Fungi - 174; Plants - 513; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Protein Annotations
BioGrid:21355eggNOG:ENOG41122P5eggNOG:KOG1735EMBL:AB015475
EMBL:AF102822EMBL:AK317148EMBL:AY050460EMBL:AY084757
EMBL:AY090336EMBL:CP002688EnsemblPlants:AT5G59890EnsemblPlants:AT5G59890.1
entrez:836111ExpressionAtlas:Q9ZSK3Gene3D:3.40.20.10GeneID:836111
Genevisible:Q9ZSK3GO:GO:0009870GO:GO:0015629GO:GO:0030042
GO:GO:0042742hmmpanther:PTHR11913hmmpanther:PTHR11913:SF22HOGENOM:HOG000039697
InParanoid:Q9ZSK3InterPro:IPR002108InterPro:IPR017904InterPro:IPR029006
iPTMnet:Q9ZSK3KEGG:ath:AT5G59890KO:K05765OMA:DWEDFRE
PANTHER:PTHR11913PaxDb:Q9ZSK3Pfam:PF00241Pfam:Q9ZSK3
Pfscan:PS51263PhylomeDB:Q9ZSK3PRIDE:Q9ZSK3PRO:PR:Q9ZSK3
PROSITE:PS51263ProteinModelPortal:Q9ZSK3Proteomes:UP000006548RefSeq:NP_568916.2
RefSeq:NP_851228.1SMART:SM00102SMR:Q9ZSK3STRING:3702.AT5G59890.1
SUPFAM:SSF55753TAIR:AT5G59890tair10-symbols:ADF4tair10-symbols:ATADF4
UniGene:At.7673UniProt:B9DGG7UniProt:Q9ZSK3
Coordinates (TAIR10) chr5:+:24122545..24123596
Molecular Weight (calculated) 16035.30 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.31
Length 139 amino acids
Sequence (TAIR10)
(BLAST)
001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VIVEKVGEPI LTYEDFAASL PADECRYAIY DFDFVTAENC QKSKIFFIAW CPDVAKVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVLKSRVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)