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AT1G05180.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves.
Computational
Description (TAIR10)
AUXIN RESISTANT 1 (AXR1); CONTAINS InterPro DOMAIN/s: Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AXR1-like (TAIR:AT2G32410.1); Has 6539 Blast hits to 5902 proteins in 1375 species: Archae - 158; Bacteria - 2625; Metazoa - 1326; Fungi - 867; Plants - 442; Viruses - 0; Other Eukaryotes - 1121 (source: NCBI BLink).
Protein Annotations
BioGrid:24521eggNOG:COG0476eggNOG:KOG2016EMBL:AC000098
EMBL:AY050379EMBL:CP002684EMBL:L13922EnsemblPlants:AT1G05180
EnsemblPlants:AT1G05180.1entrez:839286ExpressionAtlas:P42744Gene3D:3.40.50.720
GeneID:839286Genevisible:P42744GO:GO:0000166GO:GO:0005634
GO:GO:0005829GO:GO:0006281GO:GO:0007131GO:GO:0009414
GO:GO:0009734GO:GO:0009735GO:GO:0009965GO:GO:0010252
GO:GO:0019781GO:GO:0045116hmmpanther:PTHR10953HOGENOM:HOG000216537
InParanoid:P42744IntAct:P42744InterPro:IPR000594InterPro:IPR016040
InterPro:IPR030667OMA:SCIADEYPaxDb:P42744Pfam:P42744
Pfam:PF00899PhylomeDB:P42744PIR:S35071PIRSF:PIRSF039099
PRIDE:P42744PRO:PR:P42744ProteinModelPortal:P42744Proteomes:UP000006548
RefSeq:NP_172010.1SMR:P42744STRING:3702.AT1G05180.1SUPFAM:SSF69572
TAIR:AT1G05180tair10-symbols:AXR1UniGene:At.10217UniPathway:UPA00885
UniProt:P42744
Coordinates (TAIR10) chr1:-:1498357..1501775
Molecular Weight (calculated) 60038.10 Da
IEP (calculated) 5.72
GRAVY (calculated) -0.18
Length 540 amino acids
Sequence (TAIR10)
(BLAST)
001: MQAVKRSRRH VEEEPTMVEP KTKYDRQLRI WGEVGQAALE EASICLLNCG PTGSEALKNL VLGGVGSITV VDGSKVQFGD LGNNFMVDAK SVGQSKAKSV
101: CAFLQELNDS VNAKFIEENP DTLITTNPSF FSQFTLVIAT QLVEDSMLKL DRICRDANVK LVLVRSYGLA GFVRISVKEH PIIDSKPDHF LDDLRLNNPW
201: PELKSFVETI DLNVSEPAAA HKHIPYVVIL VKMAEEWAQS HSGNLPSTRE EKKEFKDLVK SKMVSTDEDN YKEAIEAAFK VFAPRGISSE VQKLINDSCA
301: EVNSNSSAFW VMVAALKEFV LNEGGGEAPL EGSIPDMTSS TEHYINLQKI YLAKAEADFL VIEERVKNIL KKIGRDPSSI PKPTIKSFCK NARKLKLCRY
401: RMVEDEFRNP SVTEIQKYLA DEDYSGAMGF YILLRAADRF AANYNKFPGQ FDGGMDEDIS RLKTTALSLL TDLGCNGSVL PDDLIHEMCR FGASEIHVVS
501: AFVGGIASQE VIKLVTKQFV PMLGTYIFNG IDHKSQLLKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)