AT4G35560.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.934 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G05570.2). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:16881562..16886878 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 116494.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.35 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||
| Length | 1050 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFVKKLVEIA AKKPGGSSSE GLRANDVEPR IALHYGIPSG SHLFAYDPFQ KILAVSTKDG RIKLFGKDQT QALLVSEETS TSRFLEFVQN QGILLNVNSK 0101: NQIEVWDLDK KLLSHVHVFN GEITSFRVMQ HTPYFYVGDS SGNVSVFKIE QDSNQVIQLE YTIPYLASNG SPIEASEDTS VVSILPQLTA ESKRILLVFS 0201: SGFIALWDIK ESKPILKTGV HGMVKQDTKK ATCACWVCPS GSRVSVGYSN GDILIWSIPS KGECSPESSA MICKLNLGYK SEKIPIASLK WVYAEGKASR 0301: VYVIGSSSNS LQVVLLNEQT ETRMIKLGLH VSEPCADMEM IIADVNEQSK HKQDFLFVLG KSGRVYAYDD YMIEKYLIQS QSKSSPSLPK ETVVKLPFSD 0401: SSSITVGKFL TNPSHLLNLS DEDYAQLAKD AVPFLPFHTV PKESSRSAHF PGFTKVKNVY ITGHCDGTIS VWDMTCSFPI LVLFLKEQQI DQDVSSRGNA 0501: ALTALHYDSN SRLLVSGDHN GMVRLYRFKP EPYLTENSFI PFQGSLKKGN NHIVQSVKYI KLTGSITCIQ KSQNSKHLAI GSDQGHVSLV DIEEANVLYT 0601: KHIASDICPG IISLQFESCI VQGFEKNVLV VAMRDSSVFA LDSDTGNMIG TNMIKPKKPF KVLYMQILDG KQDTSGNGFD TSRESTVEEI SIRQPSVLVC 0701: SEKAIYIYSL AHVVQGVKKV LHKKKFSSSP ICSASTFYGT SGVGLTLVFT DGTVEIRSLP ELSQLKQTSI RGFTYSSPKP NSLPEITISA SWDGDLVMVN 0801: GDDELIVSSV LPQKETFRLV ESMNRVYKKD NSVCHEGIIT SSSPREKKSM FGSVFKTKSK RTTDTEPESS KETIEELSKI FSTANFPWNN NVENSREINT 0901: ITRVEDEEEL DIDDIDIDDH HPNQQQQEKP KEQGILSGLS KQKMANRFSN FKGKLKQMAA KNEKSVVTND EKHEEKNGAT VDQIKKKYGF TSSDEMGAAK 1001: MAQSKLQDNL KKLQGISLRT TEMEDTAKSF SSTAKELLNA VEFNKQSSKS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)