suba logo
AT3G22830.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : heat shock transcription factor A6B
Curator
Summary (TAIR10)
member of Heat Stress Transcription Factor (Hsf) family
Computational
Description (TAIR10)
heat shock transcription factor A6B (HSFA6B); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock transcription factor A2 (TAIR:AT2G26150.1); Has 2517 Blast hits to 2494 proteins in 242 species: Archae - 0; Bacteria - 17; Metazoa - 509; Fungi - 485; Plants - 797; Viruses - 4; Other Eukaryotes - 705 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5169eggNOG:KOG0627EMBL:AB022223EMBL:AY045974
EMBL:AY079374EMBL:CP002686EnsemblPlants:AT3G22830EnsemblPlants:AT3G22830.1
entrez:821854Gene3D:1.10.10.10GeneID:821854Genevisible:Q9LUH8
GO:GO:0003700GO:GO:0005634GO:GO:0005737GO:GO:0006351
GO:GO:0043565Gramene:AT3G22830.1hmmpanther:PTHR10015hmmpanther:PTHR10015:SF139
HOGENOM:HOG000237979InParanoid:Q9LUH8InterPro:IPR000232InterPro:IPR011991
InterPro:IPR027725iPTMnet:Q9LUH8KEGG:ath:AT3G22830KO:K09419
ncoils:CoilOMA:RRPIDNTPANTHER:PTHR10015PaxDb:Q9LUH8
Pfam:PF00447Pfam:Q9LUH8PhylomeDB:Q9LUH8PRINTS:PR00056
PRO:PR:Q9LUH8PROSITE:PS00434ProteinModelPortal:Q9LUH8Proteomes:UP000006548
Reactome:R-ATH-3371453Reactome:R-ATH-3371511Reactome:R-ATH-3371568Reactome:R-ATH-3371571
RefSeq:NP_188922.1scanprosite:PS00434SMART:SM00415SMR:Q9LUH8
STRING:3702.AT3G22830.1SUPFAM:SSF46785TAIR:AT3G22830tair10-symbols:AT-HSFA6B
tair10-symbols:HSFA6BUniGene:At.6312UniGene:At.67265UniProt:Q9LUH8
Coordinates (TAIR10) chr3:+:8078981..8080895
Molecular Weight (calculated) 46738.30 Da
IEP (calculated) 4.67
GRAVY (calculated) -0.90
Length 406 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)