suba logo
AT5G10100.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: embryo, root; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G65140.1); Has 2366 Blast hits to 2362 proteins in 838 species: Archae - 41; Bacteria - 1352; Metazoa - 219; Fungi - 152; Plants - 467; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
Protein Annotations
EC:3.1.3.12eggNOG:COG1877eggNOG:ENOG410IMM9EMBL:AL356332
EMBL:CP002688EnsemblPlants:AT5G10100EnsemblPlants:AT5G10100.1entrez:830874
ExpressionAtlas:F4KFG5Gene3D:3.40.50.1000GeneID:830874Genevisible:F4KFG5
GO:GO:0004805GO:GO:0005992gramene_pathway:3.1.3.12gramene_pathway:TRESYN-PWY
hmmpanther:PTHR10788hmmpanther:PTHR10788:SF19HOGENOM:HOG000239289InParanoid:F4KFG5
InterPro:IPR003337InterPro:IPR006379InterPro:IPR023214OMA:LEKHFDA
PaxDb:F4KFG5Pfam:F4KFG5Pfam:PF02358PIR:T50014
PRIDE:F4KFG5PRO:PR:F4KFG5ProteinModelPortal:F4KFG5Proteomes:UP000006548
RefSeq:NP_196572.2SMR:F4KFG5STRING:3702.AT5G10100.1SUPFAM:SSF56784
TAIR:AT5G10100tair10-symbols:TPPITIGRfam:TIGR00685TIGRfam:TIGR01484
TIGRFAMs:TIGR00685TIGRFAMs:TIGR01484UniGene:At.32415UniPathway:UPA00299
UniProt:F4KFG5
Coordinates (TAIR10) chr5:+:3157980..3160275
Molecular Weight (calculated) 41976.80 Da
IEP (calculated) 9.89
GRAVY (calculated) -0.44
Length 369 amino acids
Sequence (TAIR10)
(BLAST)
001: MSASQNIVVS ETTMSSIIPN NNNNNNNSSS QKLPPCLISI SKKKLLKNID IINGGGQRIN AWVDSMRASS PTHLKSLPSS ISTQQQLNSW IMQHPSALEK
101: FEQIMEASRG KQIVMFLDYD GTLSPIVDDP DKAFMSSKMR RTVKKLAKCF PTAIVTGRCI DKVYNFVKLA ELYYAGSHGM DIKGPAKGFS RHKRVKQSLL
201: YQPANDYLPM IDEVYRQLLE KTKSTPGAKV ENHKFCASVH FRCVDEKKWS ELVLQVRSVL KKFPTLQLTQ GRKVFEIRPM IEWDKGKALE FLLESLGFGN
301: TNNVFPVYIG DDRTDEDAFK MLRDRGEGFG ILVSKFPKDT DASYSLQDPS EVMDFLRRLV EWKQMQPRM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)