AT4G32820.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.967 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); Has 168 Blast hits to 155 proteins in 63 species: Archae - 8; Bacteria - 15; Metazoa - 66; Fungi - 5; Plants - 51; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:15831679..15841454 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 211827.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.95 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||
| Length | 1872 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFSIAAINDT ESTEKWEPLA PSKEAQEFHL SQTYHDGLLK LQAKDYDKAR ELLESILKDP IITNSKVETI ANDNHLHHLR FLALKNLATV FLELGSSHYE 0101: NALNCYLQAI DLDAKDSVLW NHLGTLSCSM GLLSISRWAF EQGLLCSPNN WNCMEKLLEV LIAVGDEVSC LSVANLILRH WPSHSRALHV KHCIEDTDSA 0201: PFAPKGIDKL EPQHVRLKFL GKRKVSDMNQ DMDATSKKLR KRVQFKLPEA SWVALLNILI GIVHPSRETV GISADIPITI ELSLSTEAVM QGMKKKDHCV 0301: DSDSSNVSVK DCNIERESGG SVKEKEPVFS EEHPQERRST RLERLRNQKP EKEGLEFDNS KDPSSDILQY LEKFVLKRGF DRESAGSFCN EESDPISEHA 0401: VVSNFVKENL ENYGAYHMGH LLLEYIANKC EHVLSRETAL KILELEKLTR HWGRDRKPEC SLFLAELYHD FDSKRSDIPD APSCMVEVTY HLSKIIESVS 0501: LDYAIDSTPS SRGKMFSDSS FKSFQGDEAA KEVLDYDTRS FWARYFWLSA RLSILEDNKA KALEEYLRCL SLLGREGIGE APVLIQRPHC RRVRELTINR 0601: IIHEINLLKI DFLLENNIPE MMEKEFYSEC VNLLAPLLFP DKDILPAYAV KTEEGISSVE LSALEVLIKA CQKSKPIDVE VYMNCHRRKL QVLLDSTGTG 0701: ESVVTPKTSS KNSSESWDHL VAEEVKAILL CISQVKNSLD QSGNSDDMVA PRDCVAGIQA LLLRVMSNIV RHFFSKRYSD SQNADGIEEE KKSCFLDAAI 0801: GFCKLQHLDA TISTKYQFDI VKRVCLVELI IRLHDLLAEY GLCCAGKNCA GEEGAFLRFA IKHLLAVDMK VKSSINSPDG LGHDMGLPDK LCRNEVKSFL 0901: EEVHVEKNEN NKTESKKDGS EEQVGYREKE QSEQQSKQIP EHTEEVAEEE KDELELLINN ALDQCFFCLY GLNLRVDGSY EDELAVHKNT SRGDYQTKEQ 1001: CVDVFQYILP YAKASSRTGL VKLRRVLRAI KKHFSQPPDD LLIGNVIDKF LDDPELCEDK LSYEAGSEGF LETITKCLIP SRTLSEYKIS LLHSSDPYLD 1101: VYRNLYFLLA QSEEVSASDK WPGFVLTKEG EEFEQQNTNL FKYDLLYNPL RFESWEKLGN IYDEEVDLLL NDGSKHINVV GWRKNSALSQ RVETSRRRSR 1201: RCLLMSLALA NSPDQQSEIH ELLALVYYDS LQSVVPFYDQ RSVLPSKDAT WTRFCENSMK HFNKAFSHRQ DWSHAFYMGK LSEKLGHSYE ISLSYYKQAM 1301: TLNPSAVDPV YRMHASRLKL LNACGKQNLE ALKVLASYCF DESIKDTAMT IIGTTTFGSS RTLEEAQDGN LEACYAKSGE GSIQMEGVWH MLYNDSLSAL 1401: GICVEGDLKH FHKARYMLAQ GLYRRGGSSD LQRAKEELSF CFKSSRSSFT INMWEIDGMV KKGRRKTPGL AGNKKALEVN LPESSRKFIT CIRKYLLFYL 1501: RLLEETEDVN TLERAFNSLR SDKRFSLCVE DLVPVAIGRY VKALVSSMSR VESAGAIINP DSQLEKIFSL FIEQGSIWPD ICNFPETRGP ETSESSLYRY 1601: LHQYIVSLEL DNKVETLETI NEKIRKRFKN PKLSNSFSAK VGRHASLAWC RALIISLALI TPLQPVSSEE SQAITPSFGL LENRRVLCVD LQSEFWSSSF 1701: EDPLESQMLE AKWRPVLSKI KNVLIFNKVV EGNLEIANSL LKSCYNFFRE TASVTLPSDI NLYFALPRLA PAGELLPGNE GVEVIDVSIP RKLLLWAYTL 1801: FHGHCGSISQ VVKYMEENTK PKMKRGASTS SVVPSVQSGG TSEPEPAPKV VQVIIPDSLG GDSCGSTPAA PL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)