AT4G32551.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : LisH dimerisation motif;WD40/YVTN repeat-like-containing domain | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
LEUNIG (LUG); FUNCTIONS IN: transcription repressor activity, protein heterodimerization activity; INVOLVED IN: flower development, negative regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: LEUNIG_homolog (TAIR:AT2G32700.6). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:15707863..15713359 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 106526.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.57 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 969 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSQTNWEADK MLDVYIHDYL VKRDLKATAQ AFQAEGKVSS DPVAIDAPGG FLFEWWSVFW DIFIARTNEK HSEVAASYIE TQMIKAREQQ LQQSQHPQVS 101: QQQQQQQQQQ IQMQQLLLQR AQQQQQQQQQ QHHHHQQQQQ QQQQQQQQQQ QQQQQHQNQP PSQQQQQQST PQHQQQPTPQ QQPQRRDGSH LANGSANGLV 201: GNNSEPVMRQ NPGSGSSLAS KAYEERVKMP TQRESLDEAA MKRFGDNVGQ LLDPSHASIL KSAAASGQPA GQVLHSTSGG MSPQVQTRNQ QLPGSAVDIK 301: SEINPVLTPR TAVPEGSLIG IPGRFAVLSV SFQLVKRVKC SISTSAHKNL LRINDWFPVS GSNQGSNNLT LKGWPLTGFD QLRSGLLQQQ KPFMQSQSFH 401: QLNMLTPQHQ QQLMLAQQNL NSQSVSEENR RLKMLLNNRS MTLGKDGLGS SVGDVLPNVG SSLQPGGSLL PRGDTDMLLK LKMALLQQQQ QNQQQGGGNP 501: PQPQPQPQPL NQLALTNPQP QSSNHSIHQQ EKLGGGGSIT MDGSISNSFR GNEQVLKNQS GRKRKQPVSS SGPANSSGTA NTAGPSPSSA PSTPSTHTPG 601: DVISMPNLPH SGGSSKSMMM FGTEGTGTLT SPSNQLADMD RFVEDGSLDD NVESFLSQED GDQRDAVTRC MDVSKGFTFT EVNSVRASTT KVTCCHFSSD 701: GKMLASAGHD KKAVLWYTDT MKPKTTLEEH TAMITDIRFS PSQLRLATSS FDKTVRVWDA DNKGYSLRTF MGHSSMVTSL DFHPIKDDLI CSCDNDNEIR 801: YWSINNGSCT RVYKGGSTQI RFQPRVGKYL AASSANLVNV LDVETQAIRH SLQGHANPIN SVCWDPSGDF LASVSEDMVK VWTLGTGSEG ECVHELSCNG 901: NKFQSCVFHP AYPSLLVIGC YQSLELWNMS ENKTMTLPAH EGLITSLAVS TATGLVASAS HDKLVKLWK |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)