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AT4G19550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : zinc ion binding;transcription regulators
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc ion binding;transcription regulators; FUNCTIONS IN: transcription regulator activity, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent, transcription initiation; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812); Has 916 Blast hits to 839 proteins in 148 species: Archae - 0; Bacteria - 97; Metazoa - 239; Fungi - 67; Plants - 82; Viruses - 13; Other Eukaryotes - 418 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J7DTeggNOG:ENOG4111953EMBL:CP002687EnsemblPlants:AT4G19550EnsemblPlants:AT4G19550.1entrez:827697ExpressionAtlas:F4JT85
GeneID:827697Gramene:AT4G19550.1InterPro:IPR011665PaxDb:F4JT85Pfam:PF07741PRIDE:F4JT85ProteinModelPortal:F4JT85
Proteomes:UP000006548RefSeq:NP_193690.2SMR:F4JT85TAIR:AT4G19550UniGene:At.32805UniProt:F4JT85
Coordinates (TAIR10) chr4:-:10659414..10661170
Molecular Weight (calculated) 24459.90 Da
IEP (calculated) 4.34
GRAVY (calculated) -1.29
Length 212 amino acids
Sequence (TAIR10)
(BLAST)
001: MVEKSVKLLA RNLKVYGNKG VFPSRQSKGD LAEDLSDISD AEVAENLSNN KEFILKKRAW ELMNPEYQKG KYRKVTTRKK KDPANKIAPS KKTSATKTES
101: NAETENKKRP SLEINYNVLD KLFDPENSPK RAKLDKPVVV GDQIEYSKQN SEESLLKSQY SEEEEEEAEE PDWNEDYSNE DAYRGNEECY GNENLEFEDL
201: DDDEEDDEGV IW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)