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AT4G01590.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1); Has 1908 Blast hits to 1345 proteins in 175 species: Archae - 3; Bacteria - 106; Metazoa - 494; Fungi - 346; Plants - 115; Viruses - 71; Other Eukaryotes - 773 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2AXeggNOG:ENOG410YZUUEMBL:AL161492EMBL:BT002836
EMBL:BT004382EMBL:CP002687EnsemblPlants:AT4G01590EnsemblPlants:AT4G01590.1
EnsemblPlants:AT4G01590.3entrez:828101ExpressionAtlas:Q9M123GeneID:828101
GO:GO:0006359Gramene:AT4G01590.1Gramene:AT4G01590.3HOGENOM:HOG000146322
InterPro:IPR024661OMA:FWNSSPYPfam:PF11705PhylomeDB:Q9M123
PIR:F85020Proteomes:UP000006548RefSeq:NP_001190652.1RefSeq:NP_192069.1
STRING:3702.AT4G01590.1TAIR:AT4G01590UniGene:At.34403UniGene:At.66575
UniProt:Q9M123
Coordinates (TAIR10) chr4:-:689077..690192
Molecular Weight (calculated) 23136.30 Da
IEP (calculated) 4.25
GRAVY (calculated) -1.25
Length 200 amino acids
Sequence (TAIR10)
(BLAST)
001: MSWKGARGKP KGYGGDYGKP EPFVIFPEIT LPDPKSISTD SQLVQSYFTF NKFWRNSPYH LGDGGVSKKE KESLNIERYS DSLKPKMKSN KNGSFFDFLV
101: LRPDNFPKEL LGDTRREQRP VKRAKWSQEA DLQKLDVFEK LEAKFKVEGK EEKEEGEDDE EVVESEGEES DNGDYDQNQD FDDDDDDYNN EDDGLVEEVY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)