suba logo
AT5G23200.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKQ8eggNOG:ENOG41127BBEMBL:AY074497EMBL:AY091243
EMBL:CP002688EnsemblPlants:AT5G23200EnsemblPlants:AT5G23200.1entrez:832384
GeneID:832384Gramene:AT5G23200.1hmmpanther:PTHR33524hmmpanther:PTHR33524:SF1
KEGG:ath:AT5G23200OMA:KRRPEWYProteomes:UP000006548RefSeq:NP_197711.2
SMR:Q8RUI8TAIR:AT5G23200UniGene:At.28796UniProt:Q8RUI8
Coordinates (TAIR10) chr5:+:7807319..7808988
Molecular Weight (calculated) 44854.40 Da
IEP (calculated) 9.11
GRAVY (calculated) -0.57
Length 399 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLFNKFQQ AVGVLAKSTT FAKNPRQLQF EADVNKLFMY TSYNRLGREA EETDAEEIIE MAGKATLSEQ QKQVQENIHY QVEKFCSLMD GILLPDVRRN
101: ESGSQSTSPR PPRRSGLTFA IGSNNAFPHA DQPLVPETKP LKLNDVSQRL MDQMGYTLET KPSVIPHKDA GQGCFIKGEA DVGTVLAFYP GVIYSPAFYK
201: YIPGYPKVDS QNSYLITRYD GTVINAQPWG LGGESREAWN GSYTPAVKAN TKTAENGSDR LWKALSKPLE GSGKGKEVLE RRNPLAFGHL ANHPAKEMTP
301: NVMICPYDFP LMAKDLRPYI PNISFGDSGE IKMKRFGSFW FKTGSKNGLE APVLKTLVLV ATRSLCNEEL LLNYRLSNSK RRPDWYTPVN EEEDRRRWS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)