AT4G10610.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.784 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CTC-interacting domain 12 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
RNA-binding protein, putative. Member of a family of proteins having an PABC binding domain (PAM motif). | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RNA-BINDING PROTEIN 37 (RBP37); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 11 (TAIR:AT1G32790.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:6557336..6559019 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35598.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.09 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||
| Length | 326 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVIESVGAN TTVEAGGLIS PSPPSSVTSQ ESGASSNNDH GGNGIHDEIG VHVARSDGGE SFKRDMRELH ELLSKLNPMA KEFIPPSLTK PVVNGFNGGF 101: FAVNNGFVAA GNFPVNEDGS FRRKKSFGQQ GKRRMNPRTS LAQREEIIRR TVYVSDIDQQ VTEEQLAGLF IGFGQVVDCR ICGDPNSVLR FAFIEFTDEV 201: GARTALNLSG TMLGFYPVKV MPSKTAIAPV NPTFLPRTED EREMCARTIY CTNIDKKLTQ TDIKLFFESV CGEVYRLRLL GDYHHPTRIG FVEFVMAESA 301: IAALNCSGVL LGSLPIRSKN KPTLTL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)