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AT3G57990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.473
plasma membrane 0.311
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:19334764 (2009): plasma membrane
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 1497 Blast hits to 1323 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 23; Fungi - 34; Plants - 61; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ITYSeggNOG:ENOG410YPE9EMBL:AL132977EMBL:AY091001EMBL:AY122933EMBL:CP002686EnsemblPlants:AT3G57990
EnsemblPlants:AT3G57990.1entrez:824968GeneID:824968Gramene:AT3G57990.1hmmpanther:PTHR34285hmmpanther:PTHR34285:SF3HOGENOM:HOG000242893
KEGG:ath:AT3G57990ncoils:CoilOMA:SHSKYREPhylomeDB:Q9M2P9PIR:T46021Proteomes:UP000006548RefSeq:NP_191358.1
TAIR:AT3G57990UniGene:At.778UniProt:Q9M2P9
Coordinates (TAIR10) chr3:-:21470244..21471347
Molecular Weight (calculated) 39894.00 Da
IEP (calculated) 10.04
GRAVY (calculated) -0.51
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MKASMKFREE QKPLFRAKVP LSILGLPFQS GIVAGESKEL SLNLSTFFES GPSLKVAYRP NDSWNPFSLI VKTGSGSFGS PISSSMLMSA EFNLLGQGNP
101: SFMLHFKPQF GDFSIKKSHS SSGFERNLIK SMNGSVSEDD SSIEVVDTPA VNGCGGGFRK VTVLPSTSAG DIAGLLSGVE VAARTSLPVR GRAVLNFRWG
201: VRVPTEIRRD FDPTAAISLR RFPFLVMNKI GIEHVDGADA KVTKSTGDPG KVSGPAQFTT SGDVAEVIEE LRTENKQLKR AVEDLREVIS NVRPYSPATI
301: DYGSHSKYRE SERNNNNNNN NNNNNNGRSR ADRWSSERTT TSDYGGKKSK EEGNVAEELK KALKGAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)