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AT2G01290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ribose-5-phosphate isomerase 2
Curator
Summary (TAIR10)
Cytosolic ribose-5-phosphate isomerase. Knockout mutation causes chloroplast dysfunction, late flowering and premature cell death.
Computational
Description (TAIR10)
ribose-5-phosphate isomerase 2 (RPI2); CONTAINS InterPro DOMAIN/s: Ribose-5-phosphate isomerase, type A, subgroup (InterPro:IPR020672), Ribose 5-phosphate isomerase, type A (InterPro:IPR004788); BEST Arabidopsis thaliana protein match is: Ribose 5-phosphate isomerase, type A protein (TAIR:AT1G71100.1); Has 5035 Blast hits to 5035 proteins in 1937 species: Archae - 235; Bacteria - 3542; Metazoa - 112; Fungi - 145; Plants - 141; Viruses - 0; Other Eukaryotes - 860 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G01290-MONOMERBioGrid:61BRENDA:5.3.1.6EC:5.3.1.6
eggNOG:COG0120eggNOG:KOG3075EMBL:AC006200EMBL:AY054172
EMBL:AY066038EMBL:CP002685EMBL:DQ446450EnsemblPlants:AT2G01290
EnsemblPlants:AT2G01290.1entrez:814657GeneID:814657Genevisible:Q9ZU38
GO:GO:0004751GO:GO:0005737GO:GO:0008219GO:GO:0009052
GO:GO:0010228Gramene:AT2G01290.1gramene_pathway:5.3.1.6gramene_pathway:CALVIN-PWY
gramene_pathway:NONOXIPENT-PWYgramene_pathway:PWY-5723gramene_pathway:RIBOKIN2-PWYHAMAP:MF_00170
hmmpanther:PTHR11934hmmpanther:PTHR11934:SF7HOGENOM:HOG000276369InParanoid:Q9ZU38
IntAct:Q9ZU38InterPro:IPR004788InterPro:IPR020672KEGG:00030+5.3.1.6
KEGG:00051+5.3.1.6KEGG:00710+5.3.1.6KEGG:ath:AT2G01290KO:K01807
MINT:MINT-8068521OMA:SMAKETIPANTHER:PTHR11934PaxDb:Q9ZU38
Pfam:PF06026Pfam:Q9ZU38PhylomeDB:Q9ZU38PIR:H84422
PRIDE:Q9ZU38PRO:PR:Q9ZU38ProteinModelPortal:Q9ZU38Proteomes:UP000006548
Reactome:R-ATH-71336RefSeq:NP_178238.1SMR:Q9ZU38STRING:3702.AT2G01290.1
SUPFAM:SSF100950SUPFAM:SSF75445TAIR:AT2G01290tair10-symbols:RPI2
TIGRfam:TIGR00021TIGRFAMs:TIGR00021UniGene:At.13537UniGene:At.52585
UniPathway:UPA00115UniProt:Q9ZU38
Coordinates (TAIR10) chr2:-:149192..149989
Molecular Weight (calculated) 28517.70 Da
IEP (calculated) 5.19
GRAVY (calculated) 0.05
Length 265 amino acids
Sequence (TAIR10)
(BLAST)
001: MALAYDPLFI TSDKSLSAFD VASSPPQPMN LTQDELKRIA AYKAVEFVES GMVLGLGTGS TAKHAVDRIG ELLRQGKLEN IVGIPTSKKT QEQALSLGIP
101: LSDLDAHPVI DLSIDGADEV DPFLNLVKGR GGSLLREKMI EGASKKFVVI VDDSKMVKHI GGSKLALPVE IVPFCWKFTA EKLRSLLEGY GCEANLRLGE
201: KGKAFVTDNG NYIVDMHVEE DMGDLGAVSD AILRLPGVVE HGMFLDMAST VIIAGELGVK IKNKH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)